BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3165.p
         (483 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312505|ref|YP_003776597.1| oxygen-independent coproporphyr...   976   0.0  
gi|300311451|ref|YP_003775543.1| anaerobic coproporphyrinogen II...   100   3e-22

>gi|300312505|ref|YP_003776597.1| oxygen-independent
           coproporphyrinogen III oxidase [Herbaspirillum
           seropedicae SmR1]
          Length = 483

 Score =  976 bits (2524), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/483 (96%), Positives = 472/483 (97%)

Query: 1   MQAAHPSILHPSASLAGMNKAVLRKMDQRGPRYTSYPTADRFSSDFAVTDYLHAVSDRRN 60
           MQ AHPS L  SASLAGMNK+VLR+MDQRGPRYTSYPTADRF+SDFAVTDYLHAVSDRR+
Sbjct: 1   MQVAHPSTLQSSASLAGMNKSVLRRMDQRGPRYTSYPTADRFTSDFAVTDYLHAVSDRRS 60

Query: 61  MSAWRALSLYLHIPFCDTICYYCACNKIVTKNRAKAALYLSYLKREISMQGSLFSGMNQV 120
           MSAWRALSLYLHIPFCDTICYYCACNKIVTKNRAKAALYLSYLKREISMQGSLFSGMNQV
Sbjct: 61  MSAWRALSLYLHIPFCDTICYYCACNKIVTKNRAKAALYLSYLKREISMQGSLFSGMNQV 120

Query: 121 EQLHFGGGTPTYLSDEQMSDLMDHIRHCFTLAPDHVGEYSIEIDPRTVSVARVHKLRQQG 180
           EQLHFGGGTPTYLSDEQMSDLMDHIRHCFTLAPDHVGEYSIEIDPRTVSV RVHKLRQQG
Sbjct: 121 EQLHFGGGTPTYLSDEQMSDLMDHIRHCFTLAPDHVGEYSIEIDPRTVSVERVHKLRQQG 180

Query: 181 FNRISLGVQDFDPEVQLAVNRVQSEEQTLEIIQAARQAGFRSVSIDLIYGLPKQNVMSMS 240
           FNRISLGVQDFDPEVQLAVNRVQSEEQTLEII+AAR AGFRSVSIDLIYGLPKQNVMSMS
Sbjct: 181 FNRISLGVQDFDPEVQLAVNRVQSEEQTLEIIRAARDAGFRSVSIDLIYGLPKQNVMSMS 240

Query: 241 RTLAKVIAASPDRIAVYNYAHMPQLFKTQRQIKEEDLPSADSKLDMLSLCIRQLTGAGYV 300
           RTLAKVIAASPDRIAVYNYAHMPQLFKTQRQIKEEDLPSADSKLDMLSLCIRQLT AGYV
Sbjct: 241 RTLAKVIAASPDRIAVYNYAHMPQLFKTQRQIKEEDLPSADSKLDMLSLCIRQLTSAGYV 300

Query: 301 YIGMDHFAKPTDDLAIAQQQGRLHRNFQGYSTHSETDLVACGVSAISAVGGSYSQNEKTL 360
           YIGMDHFAKPTDDLAIAQQQGRLHRNFQGYSTHSETDLVACGVSAISAVGGSYSQNEKTL
Sbjct: 301 YIGMDHFAKPTDDLAIAQQQGRLHRNFQGYSTHSETDLVACGVSAISAVGGSYSQNEKTL 360

Query: 361 DGYYARLENSTLPIARGIQLGMDDVLRRLIIQRLMCNFELSINSLEIAYPIVFREYFASE 420
           D YYARLENSTLPIARGIQLGMDDVLRRLIIQRLMCNFELSINSLEIAYPIVFREYFASE
Sbjct: 361 DDYYARLENSTLPIARGIQLGMDDVLRRLIIQRLMCNFELSINSLEIAYPIVFREYFASE 420

Query: 421 MEKLKQLEADGLISIEPEWITVEPKGRLLIRNICMVFDRYLTQDREKAASQNKDAPQRYS 480
           MEKLKQLE DGLI IEPEWITVEPKGRLLIRNICMVFDRYL Q+REKAASQNKDAPQRYS
Sbjct: 421 MEKLKQLEEDGLIKIEPEWITVEPKGRLLIRNICMVFDRYLNQEREKAASQNKDAPQRYS 480

Query: 481 QTV 483
           QTV
Sbjct: 481 QTV 483


>gi|300311451|ref|YP_003775543.1| anaerobic coproporphyrinogen III
           oxidase oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 414

 Score =  100 bits (249), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 114/250 (45%), Gaps = 7/250 (2%)

Query: 61  MSAWRALSLYLHIPFCDTICYYCACNKIVTKNRAKAALYLSYLKREISMQGSLFSGMNQV 120
           ++A   LSLY+H P+C   C YC  N    K+      YL  L+ ++     L  G  ++
Sbjct: 35  LTALPPLSLYVHFPWCVRKCPYCDFNSHEVKDGFPEQEYLDALRLDLEQALPLIWG-RKI 93

Query: 121 EQLHFGGGTPTYLSDEQMSDLMDHIRHCFTLAPDHVGEYSIEIDPRTVSVARVHKLRQQG 180
             +  GGGTP+ LS   +  L+  +R    L  D   E ++E +P T    +    R  G
Sbjct: 94  YSIFIGGGTPSLLSAAGLDRLLSDLRTLLPLDADI--EITMEANPGTFEADKFRSYRDSG 151

Query: 181 FNRISLGVQDFDPEVQLAVNRVQSEEQTLEIIQAARQAGFRSVSIDLIYGLPKQNVMSMS 240
            NR+S+G+Q F+     A+ R+    Q  + ++ A  A F + ++DL+Y LP+Q +    
Sbjct: 152 INRLSIGIQSFNSAHLQALGRIHDGGQAHQAVEIA-HANFDNFNLDLMYALPQQTLEQAR 210

Query: 241 RTLAKVIAASPDRIAVYNYAHMPQLFKTQRQIKEEDLPSADSKLDMLSLCIRQLTGAGYV 300
             +   I  +P  +++Y+    P     +       +P  D+  DM  +     T AGY 
Sbjct: 211 TDIQTAIDFAPPHLSLYHLTLEPNTLFAKF---PPAVPDEDTSADMQDMIGELTTQAGYG 267

Query: 301 YIGMDHFAKP 310
              +  +A+P
Sbjct: 268 NYEVSAYAQP 277


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,426,056
Number of extensions: 56392
Number of successful extensions: 128
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 2
Length of query: 483
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 394
Effective length of database: 1,198,455
Effective search space: 472191270
Effective search space used: 472191270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)