BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3164.p
         (285 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312504|ref|YP_003776596.1| hypothetical protein Hsero_3206...   377   e-106

>gi|300312504|ref|YP_003776596.1| hypothetical protein Hsero_3206
           [Herbaspirillum seropedicae SmR1]
          Length = 284

 Score =  377 bits (967), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 233/285 (81%), Positives = 249/285 (87%), Gaps = 8/285 (2%)

Query: 6   VNLLPIFLVGLMGSVHCIGMCGGIVGALSSAAPARPTPAPTLASALASQAA------SPL 59
           +NLLPIFLVGLMGSVHCIGMCGGIVGALSSAAP RPTP P  A+ L S AA      + L
Sbjct: 1   MNLLPIFLVGLMGSVHCIGMCGGIVGALSSAAPVRPTPTP--AAPLLSVAAPGRNDGARL 58

Query: 60  PRVIPIRIAGSAQVQAFGQDLVRVLGYNLGRLSSYALAGALAGGIAAGLLRGADVLGWLA 119
            R+IPI  AG  QVQA  QDLVRVL YNLGRLSSYALAGALAGGIAAGLLRGADVLGWLA
Sbjct: 59  LRIIPIHPAGGVQVQAMAQDLVRVLCYNLGRLSSYALAGALAGGIAAGLLRGADVLGWLA 118

Query: 120 PAQTLAYVITNLVLVLLGLYLTQWWTGMSRMEQLGSGLWARLRPHAARLVPVDTPAKALL 179
           PAQ +AY+ITN+VLVLLGLYLTQWW  ++R+EQ GS LW R+RP AARLVPVDTPAKALL
Sbjct: 119 PAQRVAYLITNIVLVLLGLYLTQWWPALARLEQWGSALWVRVRPLAARLVPVDTPAKALL 178

Query: 180 LGSLWGWLPCGMVYSALLTALMAGSAVQGALTMLAFGTGTLPVLLVAGLSGARLRQLAAR 239
           LGSLWGWLPCGMVYSALLTALMAGSA+QGALTMLAFG GTLPVLL AGLSGARLRQLA R
Sbjct: 179 LGSLWGWLPCGMVYSALLTALMAGSAMQGALTMLAFGAGTLPVLLAAGLSGARLRQLAQR 238

Query: 240 PAVRRVAGVIVLAFGILGLLRAAEIGGLGIARGWIDVFCVSPVHG 284
           PAVR  AGV+VLAFGI+GLLR AEIGG+GIARGWIDVFC+SP HG
Sbjct: 239 PAVRLAAGVVVLAFGIMGLLRGAEIGGMGIARGWIDVFCISPAHG 283


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.140    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 740,423
Number of extensions: 25161
Number of successful extensions: 204
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 201
Effective length of database: 1,222,130
Effective search space: 245648130
Effective search space used: 245648130
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)