BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3157.p
         (495 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312498|ref|YP_003776590.1| iron-sulfur 4Fe-4S ferredoxin t...   901   0.0  

>gi|300312498|ref|YP_003776590.1| iron-sulfur 4Fe-4S ferredoxin
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 485

 Score =  901 bits (2329), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/487 (89%), Positives = 458/487 (94%), Gaps = 5/487 (1%)

Query: 9   RQGKEGDPPPNSEGQQGQGSKDGKDEYAVIRMYAAREQIYPREIQGRFASLRWLCVFLTQ 68
           RQ KEGDPPP++       SK GKDEYAVIRMYAAREQIYPREIQGRFASLRWLCVFLTQ
Sbjct: 4   RQDKEGDPPPDT-----GDSKTGKDEYAVIRMYAAREQIYPREIQGRFASLRWLCVFLTQ 58

Query: 69  LVFYGLPWINWNERQAVLFDLASRKFYLFGLVLWPQDFIWLAALLIICAFSLFLFTAIAG 128
           LVFYGLPWINWNERQAVLFDLASRKFYLFGLVLWPQDFIWLAALLIICAFSLFLFTA+AG
Sbjct: 59  LVFYGLPWINWNERQAVLFDLASRKFYLFGLVLWPQDFIWLAALLIICAFSLFLFTAVAG 118

Query: 129 RVWCGYSCPQTVYTEIFLWIERRIEGNRSARMRLDRQPWSFDKLWRKSAKHLAWGSLALW 188
           RVWCGYSCPQTVYTEIF+WIERRIEGNRSARMRLDRQPWSFDKLWRKSAKHLAWG++ALW
Sbjct: 119 RVWCGYSCPQTVYTEIFMWIERRIEGNRSARMRLDRQPWSFDKLWRKSAKHLAWGAVALW 178

Query: 189 TGISFVGYFSPIRGLLPEIGTFALGPWESFWIVFYGFATYGNAGWMREQVCKYMCPYARF 248
           TGISFVGYFSPIR LLPEI  FALGPWESFWI+FYGFATYGNAGWMREQVCKYMCPYARF
Sbjct: 179 TGISFVGYFSPIRDLLPEISGFALGPWESFWILFYGFATYGNAGWMREQVCKYMCPYARF 238

Query: 249 QSAMFDRDSLIITYDAARGEPRMPAAKAAKLQAGAKSGDCIDCTMCVQVCPTGIDIRQGL 308
           QSAMFDRDSLIITYD ARGEPRMPAAKAAKL  GA++GDCIDCTMCVQVCPTGIDIRQGL
Sbjct: 239 QSAMFDRDSLIITYDVARGEPRMPAAKAAKLDTGARAGDCIDCTMCVQVCPTGIDIRQGL 298

Query: 309 QYMCIGCAACVDACDSVMDKIERPRGLIRYSTENAIEQGFSTPEIRRRVLRPRILIYTAI 368
           QYMCIGCAACVDACDSVMDKI+RPRGLIRYSTENA+EQGFST EIRRR++RPRILIY AI
Sbjct: 299 QYMCIGCAACVDACDSVMDKIKRPRGLIRYSTENAVEQGFSTAEIRRRLVRPRILIYGAI 358

Query: 369 LGAVICVFLGSLVVRTPLKLDVIRDRGSMGREVEDGIIENVYRLQVINTDERGHRYRISA 428
           LGAVI +F GSL VRTPLKLDVIRDRGSMGREVE+GIIENVYRLQ+INTDERGHRY + A
Sbjct: 359 LGAVIALFAGSLWVRTPLKLDVIRDRGSMGREVEEGIIENVYRLQIINTDERGHRYLVRA 418

Query: 429 SGIDGLTVDPSDPIELAATQTLMVPVRVRAPHGAGEVGSNKIHIALQAEDQPALQVSEKA 488
            G+ GL+VDP+ PIE+AATQT+ VPVRVRAPHGAGEVGSNKI I L+AEDQPAL VSEKA
Sbjct: 419 KGLAGLSVDPATPIEVAATQTVSVPVRVRAPHGAGEVGSNKIRIELEAEDQPALNVSEKA 478

Query: 489 VFLVPRR 495
           VFLVPRR
Sbjct: 479 VFLVPRR 485


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.140    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,473,713
Number of extensions: 59436
Number of successful extensions: 214
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 406
Effective length of database: 1,198,455
Effective search space: 486572730
Effective search space used: 486572730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 132 (55.5 bits)