BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3156.p
         (180 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312497|ref|YP_003776589.1| hypothetical protein Hsero_3199...   285   1e-78

>gi|300312497|ref|YP_003776589.1| hypothetical protein Hsero_3199
           [Herbaspirillum seropedicae SmR1]
          Length = 190

 Score =  285 bits (730), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 154/190 (81%), Positives = 164/190 (86%), Gaps = 10/190 (5%)

Query: 1   MQTISPKLA---AAVPWYRHRWPWLLMSGPAVVVAGI-FTAWLAISRADALVADDYYKQG 56
           MQT+SPK A   AAVPWYRHRWPWLLM+GPAVVV    FTAWLAISRADALVADDYYKQG
Sbjct: 1   MQTMSPKFASTAAAVPWYRHRWPWLLMAGPAVVVVAGVFTAWLAISRADALVADDYYKQG 60

Query: 57  KAINKDLRRDHEAQRLGASIGIAYDPAAAVLRGRLQMRQ------TPAAGEEGRTLILNL 110
           KAINKDLRRDHEAQRLGA+I IAYDPAA VLRGRLQ+RQ      +  A +  RTLILNL
Sbjct: 61  KAINKDLRRDHEAQRLGAAIDIAYDPAAGVLRGRLQLRQPAPQAQSQLADQASRTLILNL 120

Query: 111 VHPTQPAKDRTLMVQTAADGSFSLSLPEMEQARWRLVAEDGSHLWRLHGNWAWPQQRSIE 170
           VHPTQP+KDRTL VQ AADGSFS+ L EMEQARWRLVAEDGSH+WRLHG WAWPQQRS+E
Sbjct: 121 VHPTQPSKDRTLQVQPAADGSFSVPLVEMEQARWRLVAEDGSHVWRLHGTWAWPQQRSME 180

Query: 171 MNAEAYAPAE 180
           MNAEAYAPAE
Sbjct: 181 MNAEAYAPAE 190


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.131    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 640,884
Number of extensions: 26251
Number of successful extensions: 89
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 1
Length of query: 180
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 101
Effective length of database: 1,245,805
Effective search space: 125826305
Effective search space used: 125826305
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)