BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3153.p
         (419 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312493|ref|YP_003776585.1| fatty acid desaturase [Herbaspi...   724   0.0  

>gi|300312493|ref|YP_003776585.1| fatty acid desaturase
           [Herbaspirillum seropedicae SmR1]
          Length = 390

 Score =  724 bits (1869), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/377 (92%), Positives = 362/377 (96%), Gaps = 1/377 (0%)

Query: 11  KVITMSTTSHPHT-PVAPSAPMPHRKVIRSWVIPISQRSTAIALALSVLDFCLFGASLAA 69
           +V TMSTTS  H  PVAP APMPHRKVIRSWVIP+S+RSTAIAL LSV+DF LFGASLAA
Sbjct: 14  EVTTMSTTSQSHNLPVAPGAPMPHRKVIRSWVIPLSKRSTAIALLLSVIDFALFGASLAA 73

Query: 70  IVWAPWLLAKIALGVVNGFIIGRLFILGHDACHQAFTPNRKLNTWLGRLLFMPSLTPYSL 129
           IVWAPWLLAKIALGVVNGFIIGRLFILGHDACHQAFTPNRKLNTWLGRLLFMPSLTPYSL
Sbjct: 74  IVWAPWLLAKIALGVVNGFIIGRLFILGHDACHQAFTPNRKLNTWLGRLLFMPSLTPYSL 133

Query: 130 WAVGHNVVHHGYTNLKGFDFVWQPRSLEEFRALPRWRQRLERIYRSGFGPGLYYMIDMWW 189
           WAVGHNVVHHGYTNLKGFDFVWQPRSLEEF ALPRWRQRLERIYRSGFGPGLYYMIDMWW
Sbjct: 134 WAVGHNVVHHGYTNLKGFDFVWQPRSLEEFNALPRWRQRLERIYRSGFGPGLYYMIDMWW 193

Query: 190 KRMYFPSKKQMPTRRAEFIWDGVLVTAVAAVWIAGLAWAAQATEQSFWTLLVTGFAIPLL 249
           KRMYFPSKKQMPTRRAEF+WDG LVTAVAAVW+ GLAWAAQ+T QSFWTLLVTGF IPLL
Sbjct: 194 KRMYFPSKKQMPTRRAEFMWDGALVTAVAAVWVGGLAWAAQSTGQSFWTLLVTGFVIPLL 253

Query: 250 FWKAMIGFVVYVHHTHTSVAWYEDKITWAAAQPFVSTTVHLTFGRYWGALLHHIMEHTAH 309
           FWKAMIGFVVYVHHTHTSVAWY+DK+TWAAAQPFVSTTVHLTFGR+WGALLHHIMEHTAH
Sbjct: 254 FWKAMIGFVVYVHHTHTSVAWYDDKVTWAAAQPFVSTTVHLTFGRFWGALLHHIMEHTAH 313

Query: 310 HVDMSVPLYRLKQAQKKLETMLPGRIVIQRFSWRWYFDTARRCKLYDFKRLCWTDYRGRP 369
           HVDMSVPLYRLKQAQKKLETMLPGRIVIQRFSWRWYFDTARRCKLYDFKRLCWTDYRGRP
Sbjct: 314 HVDMSVPLYRLKQAQKKLETMLPGRIVIQRFSWRWYFDTARRCKLYDFKRLCWTDYRGRP 373

Query: 370 TSTPLPMPEVSKNTAEA 386
           TS PLP+PE+SK+ AEA
Sbjct: 374 TSQPLPLPEMSKSMAEA 390


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.138    0.475 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,408,616
Number of extensions: 58827
Number of successful extensions: 197
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 331
Effective length of database: 1,203,190
Effective search space: 398255890
Effective search space used: 398255890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 132 (55.5 bits)