BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3149.p
         (322 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312489|ref|YP_003776581.1| prolyl iminopeptidase [Herbaspi...   597   e-172
gi|300313233|ref|YP_003777325.1| alpha/beta hydrolase superfamil...    56   4e-09

>gi|300312489|ref|YP_003776581.1| prolyl iminopeptidase
           [Herbaspirillum seropedicae SmR1]
          Length = 326

 Score =  597 bits (1540), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 298/314 (94%), Positives = 307/314 (97%)

Query: 9   LRSLYPPIEPYDHGLLDVGDGHQVYWEVCGNPNGKPVVFLHGGPGGGCGPSHRRLFNPEK 68
           LR+ YPPIEPYDHGLLDVGDGH+VYWEVCGNP GKPVVFLHGGPGGGCGPSHRRLFNPEK
Sbjct: 13  LRTFYPPIEPYDHGLLDVGDGHRVYWEVCGNPKGKPVVFLHGGPGGGCGPSHRRLFNPEK 72

Query: 69  YRIVLFDQRGCGRSLPHANLEANTTWDLVADIERLRELLGIDRWQVFGGSWGSTLALAYA 128
           YRIVLFDQRGCGRS PHANLEANTTWDLVADIERLRE+LGI+RWQVFGGSWGSTLALAYA
Sbjct: 73  YRIVLFDQRGCGRSQPHANLEANTTWDLVADIERLREMLGIERWQVFGGSWGSTLALAYA 132

Query: 129 QTHPQRVTELVLRGIFLLRQAELDWYYQEGASWMAPDRWDEFLAPIPVAERGNLVHAYRK 188
           QTHPQRVTEL+LRGIFLLRQAELDWYYQEGASWMAPDRWDEFLAPIPVAERGNLVHAYR+
Sbjct: 133 QTHPQRVTELILRGIFLLRQAELDWYYQEGASWMAPDRWDEFLAPIPVAERGNLVHAYRQ 192

Query: 189 RLTGDDQAAKLQAARAWSRWEASTITLVADERLIDSFNDAQFALAFARIENHYFFNKGFM 248
           RLTGDD+ AKLQAARAWSRWEASTITLVADERLIDSFNDAQFALAFARIENHYFF+KGFM
Sbjct: 193 RLTGDDETAKLQAARAWSRWEASTITLVADERLIDSFNDAQFALAFARIENHYFFHKGFM 252

Query: 249 EEGQLLTNASRLEGIPGVIVQGRYDLATPAKSAWDLHQAWPGSQLHLIDSAGHAYNEPGI 308
           EEGQLL NA+RLEGIPGVIVQGRYDLATPAKSAWDLHQAWPGSQLHLIDSAGHAYNEPGI
Sbjct: 253 EEGQLLANAARLEGIPGVIVQGRYDLATPAKSAWDLHQAWPGSQLHLIDSAGHAYNEPGI 312

Query: 309 LDQLIAATDRFADR 322
           LDQLI ATD FADR
Sbjct: 313 LDQLIRATDHFADR 326


>gi|300313233|ref|YP_003777325.1| alpha/beta hydrolase superfamily
           protein [Herbaspirillum seropedicae SmR1]
          Length = 289

 Score = 56.2 bits (134), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/106 (38%), Positives = 56/106 (52%), Gaps = 7/106 (6%)

Query: 38  GNPNGKPVVFLHG--GPGGGCGPSHRRLFNPEKYRIVLFDQRGCGRSLPHANLEANTTWD 95
           G+P G P++ LHG  G G   G   +RL  P  YR +  DQRG G+S   A   AN   D
Sbjct: 21  GDPQGFPLLLLHGIRGYGETFGDLAQRL--PPGYRCIALDQRGRGQSDWDAG--ANYYTD 76

Query: 96  -LVADIERLRELLGIDRWQVFGGSWGSTLALAYAQTHPQRVTELVL 140
             VAD+E L   L + ++ + G S G   A+ YA  HP +V  L++
Sbjct: 77  AYVADVEALVARLNLRQFDLLGHSMGGINAIVYAARHPAKVRRLII 122


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,124,043
Number of extensions: 48449
Number of successful extensions: 163
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 2
Length of query: 322
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 237
Effective length of database: 1,217,395
Effective search space: 288522615
Effective search space used: 288522615
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)