BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3137.p (281 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312477|ref|YP_003776569.1| oligopeptide ABC transporter AT... 514 e-147 gi|300311168|ref|YP_003775260.1| ABC transporter ATPase [Herbasp... 234 8e-63 gi|300310896|ref|YP_003774988.1| oligopeptide ABC transporter AT... 231 6e-62 gi|300310466|ref|YP_003774558.1| dipeptide/oligopeptide/nickel A... 197 8e-52 gi|300312716|ref|YP_003776808.1| ABC transporter duplicated ATPa... 195 4e-51 >gi|300312477|ref|YP_003776569.1| oligopeptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 280 Score = 514 bits (1325), Expect = e-147, Method: Compositional matrix adjust. Identities = 253/280 (90%), Positives = 266/280 (95%) Query: 1 MTTQTLPPVPLDDIALELCALSKVYPIKRGLFQPPGELKAVNDVSLRLYRGETLGLVGES 60 M+ P PLDDIALELCAL+KVYP+KRGLFQPPG+LKAVNDVSLRLYRGETLGLVGES Sbjct: 1 MSNSHQAPAPLDDIALELCALTKVYPLKRGLFQPPGQLKAVNDVSLRLYRGETLGLVGES 60 Query: 61 GCGKSTLAKMLLGLLAPSSGNVLINGQEVDPTQRREHARHIQPIFQDPYSSLNPRKTVGE 120 GCGKSTLAKMLLGLL P+SGNVLINGQEVDPT+R+ HARHIQPIFQDPYSSLNPRKTV E Sbjct: 61 GCGKSTLAKMLLGLLPPTSGNVLINGQEVDPTERKAHARHIQPIFQDPYSSLNPRKTVAE 120 Query: 121 IVGLPLKLHGLGNAAERSRKVKDILDLVGMPERTHLQYPNQLSGGQRQRVAIARALILRP 180 IVGLPLKLHG+GNAAER+R+VKDILDLVGMPERTH QYPNQLSGGQRQRVAIARALILRP Sbjct: 121 IVGLPLKLHGIGNAAERNRQVKDILDLVGMPERTHAQYPNQLSGGQRQRVAIARALILRP 180 Query: 181 DILICDEPTSALDVSVQAQILNLLLDLKAEFGLTYLFISHDLGVVEHLVDRVAVMNKGSI 240 DILICDEPTSALDVSVQAQILNLLLDLKAEFGLTYLFISHDLGVVEHLVDRVAVMN+GSI Sbjct: 181 DILICDEPTSALDVSVQAQILNLLLDLKAEFGLTYLFISHDLGVVEHLVDRVAVMNQGSI 240 Query: 241 VECQSREQIFSNPQHPYTRMLLASALTPEPGLGIPALAAA 280 VE QSREQ+FS PQH YTRMLLASALTP+PG GIPALAAA Sbjct: 241 VELQSREQLFSEPQHLYTRMLLASALTPDPGRGIPALAAA 280 >gi|300311168|ref|YP_003775260.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 617 Score = 234 bits (596), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 127/264 (48%), Positives = 172/264 (65%), Gaps = 6/264 (2%) Query: 16 LELCALSKVYPIKRGLF-QPPGELKAVNDVSLRLYRGETLGLVGESGCGKSTLAKMLLGL 74 L++ L+ + +K G+F + + AV VS LY GETL +VGESGCGKST + LL L Sbjct: 313 LKVRDLTTRFDVKSGIFGRVRQRVHAVEKVSFDLYAGETLAIVGESGCGKSTTGRSLLRL 372 Query: 75 LAPSSGNVLINGQEVDPTQR---REHARHIQPIFQDPYSSLNPRKTVGEIVGLPLKLHGL 131 + + G V G+++ R R+ R IQ IFQDP++SL+PR TVG + P+ +HG+ Sbjct: 373 VDIAGGKVEFGGRDLAQLPRSELRQLRRDIQFIFQDPFASLDPRMTVGYSIMEPMLVHGM 432 Query: 132 GNAAERSRKVKDILDLVGMPERTHLQYPNQLSGGQRQRVAIARALILRPDILICDEPTSA 191 A+ +V +L VG+ +YP++ SGGQRQR+ IARAL L P I+I DE SA Sbjct: 433 KEGAQE--RVDALLTRVGLTPEHGQRYPHEFSGGQRQRICIARALALNPKIVIADESVSA 490 Query: 192 LDVSVQAQILNLLLDLKAEFGLTYLFISHDLGVVEHLVDRVAVMNKGSIVECQSREQIFS 251 LDVS+QAQI+NL+LDL+AE G++++FISHD+ VVE + RVAVM G IVE R IF Sbjct: 491 LDVSIQAQIVNLMLDLQAELGISFIFISHDMAVVERISHRVAVMYLGQIVEIGPRRAIFE 550 Query: 252 NPQHPYTRMLLASALTPEPGLGIP 275 NPQHPYTR L+A+ +P L P Sbjct: 551 NPQHPYTRKLMAAVPVADPTLRQP 574 Score = 177 bits (450), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 104/244 (42%), Positives = 151/244 (61%), Gaps = 18/244 (7%) Query: 38 LKAVNDVSLRLYRGETLGLVGESGCGKSTLAKMLLGLLAPSSGNVLI--------NGQEV 89 + AV D+S + +GETL +VGESG GKS + ++ L+ G + +GQ + Sbjct: 24 VDAVRDLSFHVDQGETLAIVGESGSGKSVSSLAIMRLIEHGGGKIASGSMQFLRRSGQRL 83 Query: 90 D------PTQRREHARHIQPIFQDPYSSLNPRKTVGEIVGLPLKLH-GLGNAAERSRKVK 142 D T R I IFQ+P +SLNP TVGE + ++LH GLG AA ++ ++ Sbjct: 84 DLAQADNATMRSIRGAEIAMIFQEPMTSLNPVFTVGEQIAESIRLHQGLGRAAAQAEALR 143 Query: 143 DILDLVGMPERTHL--QYPNQLSGGQRQRVAIARALILRPDILICDEPTSALDVSVQAQI 200 +L++V +PE + ++P+QLSGG RQRV IA AL +P +LI DEPT+ALDV++QAQI Sbjct: 144 -MLEMVRIPEAKRVLGRHPHQLSGGMRQRVMIAMALSCKPSLLIADEPTTALDVTIQAQI 202 Query: 201 LNLLLDLKAEFGLTYLFISHDLGVVEHLVDRVAVMNKGSIVECQSREQIFSNPQHPYTRM 260 L L+ L+ E + +FI+HD+GVV + DRV VM +G VE + +F+ P HPYT+ Sbjct: 203 LQLIRSLQQEMQMGVIFITHDMGVVAEVADRVVVMCRGEKVEENAVNPLFAAPAHPYTQS 262 Query: 261 LLAS 264 LLA+ Sbjct: 263 LLAA 266 >gi|300310896|ref|YP_003774988.1| oligopeptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 335 Score = 231 bits (588), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 124/247 (50%), Positives = 161/247 (65%), Gaps = 20/247 (8%) Query: 29 RGLFQPPGELKAVNDVSLRLYRGETLGLVGESGCGKSTLAKMLLGLLAPSSGNVLINGQE 88 RG +PP A++ V L++ GE +GLVGESGCGKSTL ++ GLL PS G VL+NG++ Sbjct: 33 RGWSRPPAITHALDKVDLKVLPGEVVGLVGESGCGKSTLGRVACGLLDPSDGQVLVNGRD 92 Query: 89 VDPTQRREHAR---HIQPIFQDPYSSLNPRKTVGEIVGLPLKLHGLGNAAERSRKVKDIL 145 RE A +Q IFQ+PY+SLNPR + +IVG AA+ + KV+ L Sbjct: 93 RASLSSREEAEARLQVQMIFQNPYASLNPRLRIDQIVG---------EAAQVNGKVEGDL 143 Query: 146 D--------LVGMPERTHLQYPNQLSGGQRQRVAIARALILRPDILICDEPTSALDVSVQ 197 D G+ +YP+Q SGGQRQR+ IARAL ++P +L+CDE +ALDVS+Q Sbjct: 144 DDYVCQQLLRAGLDPALRDRYPHQFSGGQRQRIGIARALAVQPQMLVCDEAVAALDVSIQ 203 Query: 198 AQILNLLLDLKAEFGLTYLFISHDLGVVEHLVDRVAVMNKGSIVECQSREQIFSNPQHPY 257 AQILNL +DL+AE GLTYLFISHDLGVVEH+ DRV +M G +VE ++F P HPY Sbjct: 204 AQILNLFMDLRAELGLTYLFISHDLGVVEHVSDRVVIMYLGRVVESAPVAELFGQPNHPY 263 Query: 258 TRMLLAS 264 T+ LLA Sbjct: 264 TQALLAE 270 >gi|300310466|ref|YP_003774558.1| dipeptide/oligopeptide/nickel ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 645 Score = 197 bits (501), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 99/234 (42%), Positives = 158/234 (67%), Gaps = 6/234 (2%) Query: 35 PGELKAVNDVSLRLYRGETLGLVGESGCGKSTLAKMLLGLLAPSSGNVLINGQEVDPT-- 92 PG ++ ++D++L + RG T+G++GESG GK+TLA+ + G++AP+ G++ ++G+ + PT Sbjct: 327 PG-VRILDDINLTIQRGSTVGIIGESGSGKTTLARAVAGMIAPARGSIQLDGETLSPTLE 385 Query: 93 -QRREHARHIQPIFQDPYSSLNPRKTVGEIVGLPLKL-HGLGNAAERSRKVKDILDLVGM 150 + RE R +Q +FQ+ ++LNP ++G I+ PL HGL A R R+ ++LDLV + Sbjct: 386 GRTREQFRRVQIVFQNADTALNPSHSIGRILNRPLSFYHGLKGEAMR-RRTAELLDLVQL 444 Query: 151 PERTHLQYPNQLSGGQRQRVAIARALILRPDILICDEPTSALDVSVQAQILNLLLDLKAE 210 P + P +LSGGQ+QRV +ARAL +PD+++CDE TSALD V A IL LL +L+ E Sbjct: 445 PATVIDRLPAELSGGQKQRVNLARALAAKPDLILCDEVTSALDTVVAAAILELLAELRRE 504 Query: 211 FGLTYLFISHDLGVVEHLVDRVAVMNKGSIVECQSREQIFSNPQHPYTRMLLAS 264 ++Y+FISHD+ V + D + V+ G +V + RE + + P HPY+ +LL+S Sbjct: 505 LQVSYMFISHDISTVRAICDDIVVLYAGRMVANRPREAMMAPPYHPYSHLLLSS 558 Score = 140 bits (354), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 83/239 (34%), Positives = 135/239 (56%), Gaps = 10/239 (4%) Query: 37 ELKAVNDVSLRLYRGETLGLVGESGCGKSTLAKMLLGLLAP----SSGNVLINGQEVDPT 92 +++ V +V+ + RGE L L+GESG GK+T+A LLG + G V I +++D Sbjct: 45 QVEIVKNVNFTVARGEVLALIGESGSGKTTIALSLLGYARAGCHIAGGQVRIGERQIDQM 104 Query: 93 QRRE----HARHIQPIFQDPYSSLNPRKTVGEIVGLPLKLHGLGNAAERSRKVKDILDLV 148 + H+ I Q ++ NP +T+ + V HG+ + A RK ++ + Sbjct: 105 DEKALLAMRGHHVAYIAQSAAAAFNPARTLMDQVIESALQHGVMDKASAMRKAVELFRAL 164 Query: 149 GMP--ERTHLQYPNQLSGGQRQRVAIARALILRPDILICDEPTSALDVSVQAQILNLLLD 206 +P ++ +YP+Q+SGGQ QRV A AL+ P+++I DEPT+ALDV+ Q ++L + Sbjct: 165 ALPNPDKIGERYPHQVSGGQLQRVMAAMALVTGPELVILDEPTTALDVTTQIEVLRAFKN 224 Query: 207 LKAEFGLTYLFISHDLGVVEHLVDRVAVMNKGSIVECQSREQIFSNPQHPYTRMLLASA 265 + E G T +++SHDL VV + DR+ V+ G++ E S Q+ P YT+ LLA+A Sbjct: 225 VVKELGTTAVYVSHDLAVVAQMADRIIVLRDGAVRETGSTSQVLHAPADSYTQCLLAAA 283 >gi|300312716|ref|YP_003776808.1| ABC transporter duplicated ATPase [Herbaspirillum seropedicae SmR1] Length = 529 Score = 195 bits (495), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 117/244 (47%), Positives = 163/244 (66%), Gaps = 8/244 (3%) Query: 25 YPIKRGLFQPPGELKAVNDVSLRLYRGETLGLVGESGCGKSTLAKMLLGLLAPS-SGNVL 83 Y IK+G F AV+ V L+L RGETLG+VGESG GKSTL LL L A S +G++ Sbjct: 278 YHIKQGWFAKRA-FHAVDGVDLQLRRGETLGIVGESGSGKSTLGMALLRLSAASVAGSIR 336 Query: 84 INGQEVDPTQRRE----HARHIQPIFQDPYSSLNPRKTVGEIVGLPLKLHGLGNAAERSR 139 +G + +RE +R +Q +FQDP++SL+PR+TV +IVG L+LH +AE+ R Sbjct: 337 FDGVPISERPQRELRPLRSR-MQVVFQDPFASLSPRRTVEQIVGEGLELHHPDRSAEQQR 395 Query: 140 K-VKDILDLVGMPERTHLQYPNQLSGGQRQRVAIARALILRPDILICDEPTSALDVSVQA 198 + + L+ VG+ +YP++ SGGQRQR+AIARAL+L+P++L+ DEPTSALDV+VQ Sbjct: 396 QAIVAALEEVGLSAAVLERYPHEFSGGQRQRIAIARALVLQPELLLLDEPTSALDVTVQQ 455 Query: 199 QILNLLLDLKAEFGLTYLFISHDLGVVEHLVDRVAVMNKGSIVECQSREQIFSNPQHPYT 258 Q+L LL +L+ GL YLFI+HDL VV+ + +V VM G +VE + Q+ PQ YT Sbjct: 456 QVLQLLAELQRRHGLAYLFITHDLAVVQAMAHQVIVMKDGKVVESGATAQVLQQPQQEYT 515 Query: 259 RMLL 262 R L+ Sbjct: 516 RRLV 519 Score = 181 bits (459), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 108/237 (45%), Positives = 144/237 (60%), Gaps = 8/237 (3%) Query: 36 GELKAVNDVSLRLYRGETLGLVGESGCGK--STLAKMLLGLLAPSSGNVLINGQEVDPTQ 93 G+ V+ VS + GE LVGESG GK S+LA M L A G++L++GQ+V Sbjct: 16 GDTVVVDRVSFAIAPGEKFALVGESGSGKTVSSLAVMQLNQDARYEGSILLDGQDVLAKS 75 Query: 94 RRE----HARHIQPIFQDPYSSLNPRKTVGEIVGLPLKLHGLGNAAERSRKVKDILDLVG 149 R+ + IFQ+P ++LNP T+G + L H NA + +R+ +L+ G Sbjct: 76 ERQMQQVRGNDVAMIFQEPMTALNPLFTIGNQIAEVLMHHEGLNARDAARRAVALLEKTG 135 Query: 150 MPE--RTHLQYPNQLSGGQRQRVAIARALILRPDILICDEPTSALDVSVQAQILNLLLDL 207 +PE R L YP++LSGGQRQR IA AL +P +LI DEPT+ALDV++Q QIL LL L Sbjct: 136 IPEPARRALSYPHELSGGQRQRAMIAMALACKPKLLIADEPTTALDVTIQVQILALLNQL 195 Query: 208 KAEFGLTYLFISHDLGVVEHLVDRVAVMNKGSIVECQSREQIFSNPQHPYTRMLLAS 264 + E + L ISHDL +V H DRV VM KG +VE S ++F+NPQ PYTR LL S Sbjct: 196 QREENMAVLIISHDLNLVRHFADRVGVMEKGKLVESASVAELFANPQQPYTRKLLQS 252 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.138 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 896,416 Number of extensions: 37697 Number of successful extensions: 507 Number of sequences better than 1.0e-08: 124 Number of HSP's gapped: 330 Number of HSP's successfully gapped: 141 Length of query: 281 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 197 Effective length of database: 1,222,130 Effective search space: 240759610 Effective search space used: 240759610 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)