BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3133.p
         (252 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312468|ref|YP_003776560.1| hypothetical protein Hsero_3170...   402   e-113

>gi|300312468|ref|YP_003776560.1| hypothetical protein Hsero_3170
           [Herbaspirillum seropedicae SmR1]
          Length = 256

 Score =  402 bits (1032), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/256 (83%), Positives = 226/256 (88%), Gaps = 6/256 (2%)

Query: 1   MKTLYWIGGIVVAGLWAGLGVRLLSQGYAHVTSTAAPPTASSAPAAGAPLAGAVPAVTAR 60
           MKTLYW+GGIV AGL  G GVRLL+   A     AA P   +A      LAGAVPAVTAR
Sbjct: 1   MKTLYWMGGIVAAGLLVGSGVRLLAHSDAQAAPAAAAPAPHAAAPGAP-LAGAVPAVTAR 59

Query: 61  ADAGSTVAGV-----GQYQVGDKLQQSAAVTEKPYQASGKMVDGYQEIAWESLIPKDWDP 115
           ADAGSTV GV     GQYQVGD+L+QS AVT+KPYQASGKMV+GYQEIAWE+LIPKDWDP
Sbjct: 60  ADAGSTVPGVAAATNGQYQVGDQLKQSPAVTDKPYQASGKMVNGYQEIAWEALIPKDWDP 119

Query: 116 MAPFKGLKLDQLSDDDPRADAALWKAKKYWKEAPVDPSMEGKPVRLPGFVVSLDREGEAL 175
           MAPFKGLKLDQL+D+DPRADAALWKAKKYWK+APVD SMEGKPVRLPGFVVSLDREGEAL
Sbjct: 120 MAPFKGLKLDQLTDEDPRADAALWKAKKYWKDAPVDASMEGKPVRLPGFVVSLDREGEAL 179

Query: 176 KEFLLVPYFGACIHVPPPPANQIIHVRSAKAVKNVRTMDAVWISGVLKVERSDSSMGASS 235
           KEFLLVPYFGACIHVPPPPANQIIHVRSAKAVKNVRTMDAVWISGVLKVERSDSSMGASS
Sbjct: 180 KEFLLVPYFGACIHVPPPPANQIIHVRSAKAVKNVRTMDAVWISGVLKVERSDSSMGASS 239

Query: 236 YSMKAVSVQPYTAPDN 251
           YSMKAVSV+PYTAPDN
Sbjct: 240 YSMKAVSVEPYTAPDN 255


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.130    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 747,707
Number of extensions: 27873
Number of successful extensions: 69
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 169
Effective length of database: 1,226,865
Effective search space: 207340185
Effective search space used: 207340185
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 129 (54.3 bits)