BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3131.p (244 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312466|ref|YP_003776558.1| antimicrobial peptide ABC trans... 338 2e-94 gi|300312088|ref|YP_003776180.1| lipoprotein release ABC transpo... 120 1e-28 gi|300311552|ref|YP_003775644.1| ABC transporter ATPase [Herbasp... 119 2e-28 gi|300311701|ref|YP_003775793.1| export system ATP-binding subun... 115 4e-27 gi|300311361|ref|YP_003775453.1| antimicrobial peptide ABC trans... 114 6e-27 >gi|300312466|ref|YP_003776558.1| antimicrobial peptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 245 Score = 338 bits (867), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 185/233 (79%), Positives = 203/233 (87%) Query: 7 SSPAAAIDMRELSFTWPGQSQPALLLERLSVAPGEHIFISGPSGSGKSTLLATIGGIILP 66 S P AAID+R+L FTW GQ PAL L L +A GEH+FISGPSGSGKSTLLA IGGIILP Sbjct: 7 SPPPAAIDLRDLQFTWAGQPHPALALTSLRIAAGEHVFISGPSGSGKSTLLAAIGGIILP 66 Query: 67 QAGQVEVLGQPLQTLSAARRDRFRVDHIGYIFQQFNLLPYLSILDNVLLPCQFSPYRKDR 126 Q G VEVLG+ L TL A +RDRFRVDH+G+IFQQFNLLPYLSILDNVLLPCQFS YRK R Sbjct: 67 QHGSVEVLGKRLHTLPAPQRDRFRVDHLGFIFQQFNLLPYLSILDNVLLPCQFSAYRKQR 126 Query: 127 ARQQGDDLKQVAQSLLAALDLAPALWRRPVTQLSIGQQQRVAAARSLIGRPEIIVADEPT 186 A QQG +L AQ+LLAALDLAP+LW+RPVTQLSIGQQQRVAAAR+LIGRPEIIVADEPT Sbjct: 127 ALQQGANLTAAAQALLAALDLAPSLWQRPVTQLSIGQQQRVAAARALIGRPEIIVADEPT 186 Query: 187 SALDSDRQQAFLDLLQRECAQSGAALVFVSHDQRLAERFTRRIALEQINQAAR 239 SALDSDRQQAFL+LL+RECAQSGAALVFVSHD RLA+ F R +ALEQ+N AAR Sbjct: 187 SALDSDRQQAFLELLRRECAQSGAALVFVSHDLRLAQGFDRLVALEQVNDAAR 239 >gi|300312088|ref|YP_003776180.1| lipoprotein release ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 236 Score = 120 bits (300), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 76/215 (35%), Positives = 112/215 (52%), Gaps = 8/215 (3%) Query: 19 SFTWPGQSQPALLLERLSVAPGEHIFISGPSGSGKSTLLATIGGIILPQAGQVEVLGQPL 78 +FT S L + V GE + I G SGSGKSTLL +GG+ P +G V +LG+ Sbjct: 20 TFTQGKYSVKVLGNVDIDVYHGEQVAIVGASGSGKSTLLHLLGGLDTPSSGTVSLLGKDF 79 Query: 79 QTLSAARRDRFRVDHIGYIFQQFNLLPYLSILDNVLLPCQFSPYRKDRARQQGDDLKQVA 138 +L + R R +G+++Q +LLP S LDNV +P ++ A++Q A Sbjct: 80 ASLGESERGALRNQSLGFVYQFHHLLPEFSALDNVAMPLMIRRVKRADAQEQ-------A 132 Query: 139 QSLLAALDLAPALWRRPVTQLSIGQQQRVAAARSLIGRPEIIVADEPTSALDSDRQQAFL 198 + +L + LA + P +LS G++QRVA AR+L+ P ++ADEPT LD Sbjct: 133 REMLGKVGLAQRVTHVP-GELSGGERQRVALARALVTHPACVLADEPTGNLDRSTADRTF 191 Query: 199 DLLQRECAQSGAALVFVSHDQRLAERFTRRIALEQ 233 +L+ G A V V+HD LA R R + L + Sbjct: 192 ELMIELSRTLGTAFVIVTHDIELAGRCGRVLRLSE 226 >gi|300311552|ref|YP_003775644.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 234 Score = 119 bits (299), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 74/198 (37%), Positives = 110/198 (55%), Gaps = 12/198 (6%) Query: 35 LSVAPGEHIFISGPSGSGKSTLLATIGGIILPQAGQVEVLGQPLQTLSAARRDRFRVDHI 94 +VA G + I G SGSGKSTLL + G+ P G V + G+ + L R R + Sbjct: 42 FTVAAGTTLAIVGASGSGKSTLLGLLAGLDTPSEGSVRLDGEDIYALDEDGRALLRKRKL 101 Query: 95 GYIFQQFNLLPYLSILDNVLLPCQFSPYRKD-RARQQGDDLKQVAQSLLAALDLAPALWR 153 G++FQ F LL +L+ L+NV+LP + R D RAR++ A +L + L L Sbjct: 102 GFVFQSFQLLGHLNALENVMLPLEL---RGDARAREK-------ATEMLGRVGLGSRLKH 151 Query: 154 RPVTQLSIGQQQRVAAARSLIGRPEIIVADEPTSALDSDRQQAFLDLLQRECAQSGAALV 213 P LS G+QQRVA AR+ + P +++ADEPT +LD+ +A ++L+ + G+ LV Sbjct: 152 SP-KYLSGGEQQRVALARAFVTEPPLLLADEPTGSLDAATGEAVIELMFELNRERGSTLV 210 Query: 214 FVSHDQRLAERFTRRIAL 231 V+HD +A R R I + Sbjct: 211 LVTHDNAMAARCQRTITI 228 >gi|300311701|ref|YP_003775793.1| export system ATP-binding subunit [Herbaspirillum seropedicae SmR1] Length = 240 Score = 115 bits (287), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 71/196 (36%), Positives = 105/196 (53%), Gaps = 9/196 (4%) Query: 35 LSVAPGEHIFISGPSGSGKSTLLATIGGIILPQAGQVEVLGQPLQTLSAARRDRFRVDHI 94 LS A GE +FI GPSGSGK+T L+ I GI+ P G V V G L L + FR++ I Sbjct: 39 LSAAFGEILFIVGPSGSGKTTFLSIISGILRPDGGVVRVNGVDLWNLPEDQLADFRLNTI 98 Query: 95 GYIFQQFNLLPYLSILDNVLLPCQFSPYRKDRARQQGDDLKQVAQSLLAALDLAPALWRR 154 G++FQ ++L P L+ +NV +P A + V L D+ P Sbjct: 99 GFVFQDYHLFPRLTSAENVAIPLILKNVDWKSALASANMFLDVV-GLKGCGDVFP----- 152 Query: 155 PVTQLSIGQQQRVAAARSLIGRPEIIVADEPTSALDSDRQQAFLDLLQRECAQSGAALVF 214 +LS G+QQRVA AR+++ P I++ DEPT++LD D + + L+ + ++ Sbjct: 153 --LKLSGGEQQRVAIARAIVSSPPILILDEPTASLDGDTGRMIIAFLREKILNPRRCILI 210 Query: 215 VSHDQRLAERFTRRIA 230 V+HD R++E F RI Sbjct: 211 VTHDPRISE-FADRIV 225 >gi|300311361|ref|YP_003775453.1| antimicrobial peptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 657 Score = 114 bits (286), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 118/222 (53%), Gaps = 11/222 (4%) Query: 13 IDMRELSFTWPGQSQPALLLE--RLSVAPGEHIFISGPSGSGKSTLLATIGGIILPQAGQ 70 + +R L +P + +L L + GE + I G SGSGKSTL+ +G + P AG Sbjct: 6 LQLRGLRRDFPAGDEKITVLNDVNLDIHAGELVAIVGASGSGKSTLMNILGCLDKPSAGS 65 Query: 71 VEVLGQPLQTLSAARRDRFRVDHIGYIFQQFNLLPYLSILDNVLLPCQFSPYRKDRARQQ 130 V G+ L A + R +H G+IFQ+++LL L NV +P ++ + RQ+ Sbjct: 66 YLVAGRETGKLDADELAQLRREHFGFIFQRYHLLSDLDATANVEVPSVYAGLEPLQRRQR 125 Query: 131 GDDLKQVAQSLLAALDLAPALWRRPVTQLSIGQQQRVAAARSLIGRPEIIVADEPTSALD 190 A LLA L LA +P QLS GQQQRV+ AR+L+ ++I+ADEPT ALD Sbjct: 126 -------AGELLARLGLAERSHHKP-GQLSGGQQQRVSIARALMNGGDVILADEPTGALD 177 Query: 191 SDRQQAFLDLLQRECAQSGAALVFVSHDQRLAERFTRRIALE 232 S Q + +L +E G ++ V+HD ++A R I ++ Sbjct: 178 SHSGQEVIKIL-KELHAEGHTIIIVTHDMQVASHAQRIIEIK 218 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.134 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 702,271 Number of extensions: 28248 Number of successful extensions: 512 Number of sequences better than 1.0e-08: 113 Number of HSP's gapped: 353 Number of HSP's successfully gapped: 122 Length of query: 244 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 161 Effective length of database: 1,226,865 Effective search space: 197525265 Effective search space used: 197525265 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)