BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3130.p
         (194 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312465|ref|YP_003776557.1| hypothetical protein Hsero_3167...   291   4e-80

>gi|300312465|ref|YP_003776557.1| hypothetical protein Hsero_3167
           [Herbaspirillum seropedicae SmR1]
          Length = 193

 Score =  291 bits (744), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 138/171 (80%), Positives = 159/171 (92%)

Query: 24  DDGHDHHGNHPPHVHGVGKLDVALEGNTLTLHLDSPLINLVGFEHAANSAKDKDTVRAAA 83
           DD HDHHGNHP HVHGVGKLDVALEGNTLTLHLD+PL+N+VGFEHAA+S+KDKDTVRAAA
Sbjct: 23  DDAHDHHGNHPAHVHGVGKLDVALEGNTLTLHLDTPLVNVVGFEHAASSSKDKDTVRAAA 82

Query: 84  QSLRDVGRMFATDASAQCKPAEVQLESAVLTPALLGEKAPASSEAAPTDGHADLDGDFTL 143
           ++LR+V R+FATDA+AQCK AE+QLESA L+PALLGEKA AS++ AP DGHADLDGDFTL
Sbjct: 83  RTLREVNRIFATDAAAQCKSAEIQLESAALSPALLGEKAAASAQDAPKDGHADLDGDFTL 142

Query: 144 VCASPGALNTIDVSGLFAAFPGFHRIDVQMATPKKQGAAQLVPGSAVIPLN 194
           VCASPGAL T+D++GLF+AFPGF RIDVQ+ATPKKQGA QL PG+A+IPLN
Sbjct: 143 VCASPGALTTLDLNGLFSAFPGFQRIDVQLATPKKQGALQLTPGNALIPLN 193


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 508,073
Number of extensions: 20436
Number of successful extensions: 74
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 114
Effective length of database: 1,241,070
Effective search space: 141481980
Effective search space used: 141481980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)