BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3129.p (278 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312464|ref|YP_003776556.1| Mn2+/Zn2+ ABC transporter ATPas... 491 e-140 gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transport... 92 3e-20 gi|300312969|ref|YP_003777061.1| nitrate/sulfonate/bicarbonate A... 91 9e-20 gi|300313547|ref|YP_003777639.1| nitrate/sulfonate/bicarbonate A... 83 2e-17 gi|300311547|ref|YP_003775639.1| ABC transporter ATPase [Herbasp... 82 6e-17 >gi|300312464|ref|YP_003776556.1| Mn2+/Zn2+ ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 280 Score = 491 bits (1265), Expect = e-140, Method: Compositional matrix adjust. Identities = 245/278 (88%), Positives = 260/278 (93%), Gaps = 2/278 (0%) Query: 1 MNAAISLDNLTVSYRRHPALHHVSGAFERGSLTAIVGPNGAGKSTLLKSMLGLVRCNDGR 60 MNAAISL+NLTVSYRRHPALHHV+GAFERGSLTA+VGPNGAGKSTLLKSMLGLVRCNDGR Sbjct: 1 MNAAISLENLTVSYRRHPALHHVNGAFERGSLTAVVGPNGAGKSTLLKSMLGLVRCNDGR 60 Query: 61 VQTHVDSRRIAYLPQQAEIDRSFPINVLDCVLLGYWQAKGNWGGIDAAMRQRAVQALAAV 120 V THVD+RRIAYLPQQAEIDRSFPI+VLDCVLLGYWQAKGNWGGIDAAM RA QALAAV Sbjct: 61 VLTHVDARRIAYLPQQAEIDRSFPISVLDCVLLGYWQAKGNWGGIDAAMCARARQALAAV 120 Query: 121 GLDGFATRPVSSLSVGQFQRVLFARILLQDAEVILLDEPFNAIDARTTGDLLRIISAWHA 180 GLDGF+ RPV+SLSVGQFQRVLFARILLQDAEVILLDEPFNAIDARTTGDLLRIISAWHA Sbjct: 121 GLDGFSGRPVASLSVGQFQRVLFARILLQDAEVILLDEPFNAIDARTTGDLLRIISAWHA 180 Query: 181 ERRTVIAVLHDHDQVRRAFPQTLLLARNVVAWGETAEVMCEENLQRARAMAEAVDEHAGV 240 ERRTVIAVLHDHDQVRRAFPQTLLLAR+VVAWG+TAEVMCEENLQRARAMAEAVDE AGV Sbjct: 181 ERRTVIAVLHDHDQVRRAFPQTLLLARHVVAWGQTAEVMCEENLQRARAMAEAVDEQAGV 240 Query: 241 CEVSQAEVMALSRLHEHGHDHSHLHD--HAAHRAAKGG 276 CEVS+A+V+ALS+ H+H H H H H+ H A KGG Sbjct: 241 CEVSEADVLALSQSHDHVHAHLHAHEPTHEHAHAGKGG 278 >gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 359 Score = 92.4 bits (228), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 111/225 (49%), Gaps = 11/225 (4%) Query: 4 AISLDNLTVSYRRHPALHHVSGAFERGSLTAIVGPNGAGKSTLLKSMLGLVRCNDGRV-- 61 +I + ++ + AL+ VS F G LTA++GP+G GK+TLL+ + GL + G+V Sbjct: 2 SIEVHHIQKRFGSFTALNDVSLNFPAGELTALLGPSGCGKTTLLRIIAGLESPDSGQVLL 61 Query: 62 ------QTHVDSRRIAYLPQQAEIDRSFPINVLDCVLLGYWQAKGNWGGIDAAMRQRAVQ 115 HV R++ ++ Q + + + V + + G + +A +R++ + Sbjct: 62 DGEDASARHVRERQVGFVFQHYALFKH--MTVFENIAFGLRVKPRSQRPSEAVIREKVKR 119 Query: 116 ALAAVGLDGFATRPVSSLSVGQFQRVLFARILLQDAEVILLDEPFNAIDARTTGDLLRII 175 L V LD A R LS GQ QR+ AR L + V+LLDEPF A+DA+ +L R + Sbjct: 120 LLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWL 179 Query: 176 SAWHAERR-TVIAVLHDHDQVRRAFPQTLLLARNVVAWGETAEVM 219 H E T I V HD ++ Q +L+ + V T E + Sbjct: 180 RRLHDELHVTSIFVTHDQEEALEVADQVVLMNKGQVEQIGTPEAV 224 >gi|300312969|ref|YP_003777061.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 91.3 bits (225), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 66/208 (31%), Positives = 109/208 (52%), Gaps = 21/208 (10%) Query: 1 MNAAISLDNLTVSY-------RRHPALHHVSGAFERGSLTAIVGPNGAGKSTLLKSMLGL 53 M A+ DN+T ++ +R+ A+ + A G ++VGP G GKSTLL GL Sbjct: 1 MTPALQFDNITCTFVSKDDRSQRYTAVANTDLAIAPGEFVSVVGPTGCGKSTLLNVGAGL 60 Query: 54 VRCNDGRVQTHVD-----SRRIAYLPQQAEIDRSFPI-NVLDCVLLGYWQAKGNWGGIDA 107 ++ + G V+ + +RR Y+ Q + P + L V+ G Q +G+ + Sbjct: 61 LQPSSGSVKVFGEELKGINRRAGYMFQAEAL---MPWRSALQNVIAGL-QYRGHE---EK 113 Query: 108 AMRQRAVQALAAVGLDGFATRPVSSLSVGQFQRVLFARILLQDAEVILLDEPFNAIDART 167 A + Q LA VGL GF R LS G +RV A+ L+ D ++IL+DEPF+A+D +T Sbjct: 114 AAAELGEQWLARVGLQGFGDRYPHQLSGGMRKRVALAQTLILDPDIILMDEPFSALDIQT 173 Query: 168 TGDLL-RIISAWHAERRTVIAVLHDHDQ 194 + ++ W+A+++ V+ + HD D+ Sbjct: 174 RQLMENEVLDLWNAKKKAVLFITHDLDE 201 >gi|300313547|ref|YP_003777639.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 83.2 bits (204), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/176 (34%), Positives = 86/176 (48%), Gaps = 21/176 (11%) Query: 30 GSLTAIVGPNGAGKSTLLKSMLGLVRCNDGRV----QTHVDSRRI--------AYLPQQA 77 G AIVGP+G GKST +K GL + N G V QT + LP + Sbjct: 33 GEFIAIVGPSGCGKSTFMKLATGLKQPNRGSVVIDGQTVTGPLKFVGMAFQAPTLLPWRT 92 Query: 78 EIDRSF-PINVLDCVLLGYWQAKGNWGGIDAAMRQRAVQALAAVGLDGFATRPVSSLSVG 136 +D P+ +++ + Q K + +RA+ L VGLDG+A + LS G Sbjct: 93 TLDNVLLPLEIVEPYRRDFKQKKAEYT-------ERALSLLKTVGLDGYADKFPWQLSGG 145 Query: 137 QFQRVLFARILLQDAEVILLDEPFNAIDARTTGDLLRIISAWHAERR-TVIAVLHD 191 QR R L+ + +++LLDEPF A+DA T +L ++ AERR VI V HD Sbjct: 146 MQQRASICRALIHEPKMLLLDEPFGALDAFTREELWCVLRDLWAERRFNVILVTHD 201 >gi|300311547|ref|YP_003775639.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 359 Score = 81.6 bits (200), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 69/199 (34%), Positives = 101/199 (50%), Gaps = 17/199 (8%) Query: 5 ISLDNLTVSYRRHPALHHVSGAFERGSLTAIVGPNGAGKSTLLKSMLGLVRCNDGRVQTH 64 +S+ + + AL VS RG + ++GP+G GK+TLL+++ GL R + GR+ H Sbjct: 13 LSVREVEKRFGSFTALDRVSLEVRRGEMVCLLGPSGCGKTTLLRTIAGLERQDSGRL--H 70 Query: 65 VDSRRIAYLPQQAE----IDRS---FP-INVLDCVLLGYWQAKGNWGGIDAAMRQRAVQA 116 D R I+ LP QA + +S FP ++V D V G + R+R + Sbjct: 71 ADGRDISQLPPQARDYGILFQSYALFPNLSVADNVAYGLGRMSRQQ------KRERVTEM 124 Query: 117 LAAVGLDGFATRPVSSLSVGQFQRVLFARILLQDAEVILLDEPFNAIDARTTGDL-LRII 175 L+ VGLDG + LS GQ QRV AR L ++LLDEP +A+DA+ L L I Sbjct: 125 LSMVGLDGSQDKYPGQLSGGQQQRVALARALAPSPSLLLLDEPLSALDAQVREHLQLEIR 184 Query: 176 SAWHAERRTVIAVLHDHDQ 194 R T + V HD ++ Sbjct: 185 RLQKQFRITTLMVTHDQEE 203 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.134 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 786,353 Number of extensions: 32270 Number of successful extensions: 433 Number of sequences better than 1.0e-08: 96 Number of HSP's gapped: 356 Number of HSP's successfully gapped: 101 Length of query: 278 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 194 Effective length of database: 1,222,130 Effective search space: 237093220 Effective search space used: 237093220 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 130 (54.7 bits)