BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3124.p (673 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312458|ref|YP_003776550.1| methyl-accepting chemotaxis sen... 1066 0.0 gi|300310309|ref|YP_003774401.1| methyl-accepting chemotaxis tra... 624 e-180 gi|300313825|ref|YP_003777917.1| methyl-accepting chemotaxis tra... 534 e-152 gi|300309601|ref|YP_003773693.1| methyl-accepting chemotaxis tra... 460 e-130 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 381 e-106 >gi|300312458|ref|YP_003776550.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 684 Score = 1066 bits (2757), Expect = 0.0, Method: Compositional matrix adjust. Identities = 595/686 (86%), Positives = 620/686 (90%), Gaps = 15/686 (2%) Query: 1 MLSSLRTRLIVICVLIVAIAMIVLSAVNITTVRSDTLAAISSQTQQLTESHAANISEWVR 60 MLSSLR RLI ICVLIVA+AMI+LSA NI TVRSDTL AISSQTQQLTESHAANISEWVR Sbjct: 1 MLSSLRARLIFICVLIVALAMIILSAANIFTVRSDTLEAISSQTQQLTESHAANISEWVR 60 Query: 61 SKRVATGAMKQALKQSDVLPIVAAAQEAGSFDDAYIGYPDKRMLALHPMPPGYDPTARPW 120 SKRV TGAMKQALKQSDVLPIVAAAQEAGSFDDAYIGYPDKRMLALHPMP GYDPTARPW Sbjct: 61 SKRVVTGAMKQALKQSDVLPIVAAAQEAGSFDDAYIGYPDKRMLALHPMPAGYDPTARPW 120 Query: 121 YKQAVEAGKSVLTAPYVDATTGKLVVSFAEPVMDKGSLQAVLGSDVQLDNVVRNVAGIKP 180 YKQAVEAGK VLTAPYVDATTGKLVV+FAEPV DK +LQAVLGSDVQLDNVVR VAGIKP Sbjct: 121 YKQAVEAGKPVLTAPYVDATTGKLVVTFAEPVGDKSNLQAVLGSDVQLDNVVRTVAGIKP 180 Query: 181 TPSSFAFIVGKDGLIITHPNKELALKPVSALDPSLSPQSLAGMKQGGSATIGGVSYLLFT 240 TPSSFAFIVGKDG+IITHPNKELALKPVS+LD +LS QSLAGMKQGGSATIGG+ YLLFT Sbjct: 181 TPSSFAFIVGKDGVIITHPNKELALKPVSSLDQTLSAQSLAGMKQGGSATIGGIRYLLFT 240 Query: 241 QPIANTDWSLLVALDYREATQAIGVLMTLSVVLALVAIAAAAVLLSYTITRLLRRLGVVR 300 QPIANTDWSL+VALDYREAT AIG LMTLS VLA++AI A+A+LLSYTITRLLRRLGVVR Sbjct: 241 QPIANTDWSLVVALDYREATHAIGALMTLSTVLAVLAIVASAILLSYTITRLLRRLGVVR 300 Query: 301 DAMEDIASGDGDLTRRLDTNGKDELAQISRAFNHFADKISRTLLDIRRASESVKVSSSEI 360 +AME+IASGDGDLTRRLDT+GKDELAQISRAFNHFADKISRTLLDIRRASESVKVSSSEI Sbjct: 301 NAMEEIASGDGDLTRRLDTSGKDELAQISRAFNHFADKISRTLLDIRRASESVKVSSSEI 360 Query: 361 ASGNMDLSARTEQQAGSLEETASAMEELTSTVKQNADNARQANQLAVSASDVAVHGGTVV 420 ASGNMDLSARTEQQAGSLEETASAMEELTSTVKQNADNARQANQLAVSASDVAVHGG VV Sbjct: 361 ASGNMDLSARTEQQAGSLEETASAMEELTSTVKQNADNARQANQLAVSASDVAVHGGQVV 420 Query: 421 GQVVSTMSSINESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR 480 GQVV+TMSSINESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR Sbjct: 421 GQVVATMSSINESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR 480 Query: 481 SLAQRSATAAKEIKQLIDDSVQKVETGSQLVAQAGSTMDEVVSSVKRVTDIVGEISSASQ 540 SLAQRSATAAKEIK LIDDSVQKVETGSQLVAQAGSTM+EVVSSV+RVTDIVGEIS+ASQ Sbjct: 481 SLAQRSATAAKEIKGLIDDSVQKVETGSQLVAQAGSTMEEVVSSVRRVTDIVGEISAASQ 540 Query: 541 EQSAGISEVGNAVTLMDEATQQNAALVEQAAAAAKSLQEQAAHLAEVVAGFKLDESAHAA 600 EQS+GI+EVGNAV MDEATQQNAALVEQAAAAAKSLQEQAAHLA VVAGFKLDES A Sbjct: 541 EQSSGITEVGNAVNQMDEATQQNAALVEQAAAAAKSLQEQAAHLAAVVAGFKLDESGAAH 600 Query: 601 PRAASAPPPSPAASPAPAARSAPINVTPKPVPLKAKTPNRPAL-------------PAEP 647 S PP AA AP ARSA +NVTPKP LKAK +P L PA Sbjct: 601 --PMSPPPAPAAAPAAPQARSAAVNVTPKPAALKAKPAAKPVLAAQAAAAPAPASAPALA 658 Query: 648 AAAKSEPKPTTKAAPKSSGGDDWEEF 673 A + PK KAAPKSSGGDDWEEF Sbjct: 659 AKPPAAPKAPGKAAPKSSGGDDWEEF 684 >gi|300310309|ref|YP_003774401.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 625 Score = 624 bits (1609), Expect = e-180, Method: Compositional matrix adjust. Identities = 339/600 (56%), Positives = 435/600 (72%), Gaps = 6/600 (1%) Query: 3 SSLRTRLIVICVLIVAIAMIVLSAVNITTVRSDTLAAISSQTQQLTESHAANISEWVRSK 62 +SLRTRLI +C IV +AM+ + N T RS T++ + +Q QL +S AA I+EW SK Sbjct: 23 TSLRTRLIALCAGIVVLAMLAIVLTNFLTARSRTMSTLDTQMTQLAQSQAAAIAEWSDSK 82 Query: 63 RVATGAMKQALKQSDVLPIVAAAQEAGSFDDAYIGYPDKRML--ALHPMPPGYDPTARPW 120 ++ ++K+A +D LP V AAQ AG FD AY+GY DK + P YDPT RPW Sbjct: 83 KLVVTSIKEAADAADPLPFVKAAQTAGGFDLAYLGYADKHAVFSQQRSRAPDYDPTKRPW 142 Query: 121 YKQAVEAGKSVLTAPYVDATTGKLVVSFAEPVMDKGSLQAVLGSDVQLDNVVRNVAGIKP 180 Y+QA + + VLTAPY A+TGKL+V+FA+ V G + AV +DV LD VV +V IKP Sbjct: 143 YQQAAKTSEPVLTAPYTSASTGKLLVTFAQSVSKDGQVAAVAAADVLLDTVVADVVAIKP 202 Query: 181 TPSSFAFIVGKDGLIITHPNKELALKPVSALDPSLSPQSL-AGMKQG--GSATIGGVSYL 237 TP+S+AF+ G II HPN +L LKP++ LD +++PQ+L M+ G + G + Sbjct: 203 TPNSYAFLADLSGKIIAHPNDKLRLKPLADLDAAITPQTLDEAMRTGVHQDVALDGRRQM 262 Query: 238 LFTQPIANTDWSLLVALDYREATQAIGVLMTLSVVLALVAIAAAAVLLSYTITRLLRRLG 297 LF + TDW L+VALD +A ++ ++ S V+A++ AA++L I+RLL RL Sbjct: 263 LFVARVGGTDWLLVVALDRADALASLSAMLVSSGVMAVLVTVLAALVLGALISRLLGRLT 322 Query: 298 VVRDAMEDIASGDGDLTRRLDTNGK-DELAQISRAFNHFADKISRTLLDIRRASESVKVS 356 VV+ A+E+IA GDGDLTRRLDT+G+ DEL +I AFN F DKI ++DIR AS ++ + Sbjct: 323 VVQGALEEIADGDGDLTRRLDTHGRSDELGRIGAAFNRFVDKIEHVMIDIRDASHTIHAA 382 Query: 357 SSEIASGNMDLSARTEQQAGSLEETASAMEELTSTVKQNADNARQANQLAVSASDVAVHG 416 S +IASGNMDLS RTE QA SLE+TA+AME+LTS+V+ NADNA QANQL+ SAS +A G Sbjct: 383 SRDIASGNMDLSQRTESQASSLEQTAAAMEQLTSSVRHNADNAMQANQLSQSASQIATQG 442 Query: 417 GTVVGQVVSTMSSINESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA 476 GT+V QVV TM+ IN SS+KIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA Sbjct: 443 GTMVEQVVQTMNGINASSQKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA 502 Query: 477 SEVRSLAQRSATAAKEIKQLIDDSVQKVETGSQLVAQAGSTMDEVVSSVKRVTDIVGEIS 536 SEVRSLAQRSATAAKEIK LI DSV +V+ G VAQAG+T+ VV SV++V+D+V EI+ Sbjct: 503 SEVRSLAQRSATAAKEIKVLITDSVGQVQAGEDTVAQAGATIRSVVDSVQKVSDVVAEIT 562 Query: 537 SASQEQSAGISEVGNAVTLMDEATQQNAALVEQAAAAAKSLQEQAAHLAEVVAGFKLDES 596 +AS+EQS GI++ +AV MD+ TQQNAALVEQAAA A+SLQEQA LA +VA F+L +S Sbjct: 563 AASREQSQGINQANDAVAHMDQTTQQNAALVEQAAAGAQSLQEQAERLAGIVALFRLRDS 622 >gi|300313825|ref|YP_003777917.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 598 Score = 534 bits (1375), Expect = e-152, Method: Compositional matrix adjust. Identities = 299/598 (50%), Positives = 409/598 (68%), Gaps = 5/598 (0%) Query: 1 MLSSLRTRLIVICVLIVAIAMIVLSAVNITTVRSDTLAAISSQTQQLTESHAANISEWVR 60 M +S++ R++ + ++ ++ V+ V+ ++ D AI + + + I+EWV Sbjct: 1 MFNSIKARILFYTITLLIASLAVVGTVSFFIIKLDNDRAIERNAESVASGFGSTINEWVA 60 Query: 61 SKRVATGAMKQALKQSDVLPIVAAAQEAGSFDDAYIGYPDKRML--ALHPMPPGYDPTAR 118 ++ T A + +D + ++ Q++G F +G DK A +P GYDPTAR Sbjct: 61 ARTAMTVAAADGVLNADPVFVIKTLQKSGGFYVTTLGKEDKTAFTSAAEGLPAGYDPTAR 120 Query: 119 PWYKQAVEAGKSVLTAPYVDATTGKLVVSFAEPVMDKGSLQAVLGSDVQLDNVVRNVAGI 178 PWYKQAV AGK VLT PY D T K +VSF PVM G V+ + + LD V V I Sbjct: 121 PWYKQAVAAGKPVLTKPYTDVATKKPMVSFTAPVMQNGQRAGVVAAAMFLDGVSDVVRSI 180 Query: 179 KPTPSSFAFIVGKDGLIITHPNKELALKPVSALDPSLSPQ---SLAGMKQGGSATIGGVS 235 PTP+SFAF+V +DGL++ HP+ + KP + L+P+ +LA + + G + Sbjct: 181 HPTPASFAFLVDRDGLMLAHPDGQWVNKPAKEWNAELTPERLNALAADDKASEVMLEGAA 240 Query: 236 YLLFTQPIANTDWSLLVALDYREATQAIGVLMTLSVVLALVAIAAAAVLLSYTITRLLRR 295 L+ PI T+W+L++A+D + T + +++ ++ AA ++S T + +R Sbjct: 241 KLVKGVPIKGTEWTLMLAMDKADVTAGLRNASRSALIALVLVALVAAGIMSLITTAVFQR 300 Query: 296 LGVVRDAMEDIASGDGDLTRRLDTNGKDELAQISRAFNHFADKISRTLLDIRRASESVKV 355 L VR AM++++SG+GDLT RL +G DE+ QISR+FN F ++I+ L D+RR+S++VK+ Sbjct: 301 LSRVRRAMDNLSSGNGDLTLRLTEDGSDEVTQISRSFNTFVNQITGILQDVRRSSDTVKI 360 Query: 356 SSSEIASGNMDLSARTEQQAGSLEETASAMEELTSTVKQNADNARQANQLAVSASDVAVH 415 SS+EIA+GN DLSARTEQQAG+LEETASAMEELTSTV+QN++NAR+AN+LA +AS +A Sbjct: 361 SSTEIATGNQDLSARTEQQAGALEETASAMEELTSTVQQNSENARRANELAGNASKIAAQ 420 Query: 416 GGTVVGQVVSTMSSINESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVV 475 GG VVG VVSTM +IN SSR+I DII+VIDGIAFQTNILALNAAVEAARAGEQGRGFAVV Sbjct: 421 GGEVVGNVVSTMEAINASSRQIADIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVV 480 Query: 476 ASEVRSLAQRSATAAKEIKQLIDDSVQKVETGSQLVAQAGSTMDEVVSSVKRVTDIVGEI 535 ASEVRSLAQRSA AAKEIK LID SV KV G LV QAG TM+++V+S++ V+ IV EI Sbjct: 481 ASEVRSLAQRSAQAAKEIKVLIDSSVSKVADGGVLVTQAGQTMEQIVASIRDVSVIVSEI 540 Query: 536 SSASQEQSAGISEVGNAVTLMDEATQQNAALVEQAAAAAKSLQEQAAHLAEVVAGFKL 593 + AS EQ+ GI EV A+T +DE TQQNAALVEQAAAAA+SLQ++A L+ +V GFK+ Sbjct: 541 AHASAEQNGGIQEVNLAITHIDEGTQQNAALVEQAAAAARSLQDEAHRLSVLVGGFKM 598 >gi|300309601|ref|YP_003773693.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 460 bits (1184), Expect = e-130, Method: Compositional matrix adjust. Identities = 267/599 (44%), Positives = 377/599 (62%), Gaps = 7/599 (1%) Query: 1 MLSSLRTRLIVICVLIVAIAMIVLSAVNITTVRSDTLAAISSQTQQLTESHAANISEWVR 60 MLSSLR R+I +L+V ++++ +A N R AA + HAA I +W+ Sbjct: 1 MLSSLRARVICALILLVISSVLISTAANYLIARKGLNAATDDDLATAVDQHAAVIGDWLA 60 Query: 61 SKRVATGAMKQALKQSDVLPIVAAAQEAGSFDDAYIGYPDKR--MLALHPMPPGYDPTAR 118 K +++ SD ++ Q AG F D +GYPDKR +P YDPT R Sbjct: 61 GKSKMIASLEDISLTSDPDAMLKQIQVAGGFYDVGVGYPDKRAKFTDWPNIPATYDPTTR 120 Query: 119 PWYKQAVEAGKSVLTAPYVDATTGKLVVSFAEPVMDKGSLQAVLGSDVQLDNVVRNVAGI 178 PWYK ++AGK V PYV +T+G L+V+ A PVM G L+AV+ DV LD+VV N+ I Sbjct: 121 PWYKGVLQAGKPV-ALPYV-STSGLLLVALARPVMRDGVLKAVVVGDVALDSVVENIKSI 178 Query: 179 KPTPSSFAFIVGKDGLIITHPNKELALKPVSALDPSLSPQSLAGMKQGG---SATIGGVS 235 PTPSSF +V + G II HP+ +L K S L P S ++A G + G Sbjct: 179 HPTPSSFGMLVEQGGRIIAHPDAQLRFKQASELAPEFSDLNVANAGPGQPPVHIVVDGRE 238 Query: 236 YLLFTQPIANTDWSLLVALDYREATQAIGVLMTLSVVLALVAIAAAAVLLSYTITRLLRR 295 L+ Q + TDW+++VA+D +EA+ + L+ S++ + + AA+++ + RR Sbjct: 239 KLVRVQAVPGTDWNIVVAIDQQEASAGVRALLASSLLSLVAVVIAASLIGAAVTATAFRR 298 Query: 296 LGVVRDAMEDIASGDGDLTRRLDTNGKDELAQISRAFNHFADKISRTLLDIRRASESVKV 355 LG + AM I SG GDLT+RL +G+DE+A I+++FN F K+ + DIR A E+V+V Sbjct: 299 LGQISAAMTAIGSGSGDLTQRLPDHGRDEVAIIAQSFNAFVAKLQSVMRDIRDAGETVRV 358 Query: 356 SSSEIASGNMDLSARTEQQAGSLEETASAMEELTSTVKQNADNARQANQLAVSASDVAVH 415 +S EIA+ N DLS RTE A SLE+TA++M E+++TV ++A A +A+Q + +A+ +A Sbjct: 359 ASDEIAAANHDLSVRTESAAASLEQTAASMAEISATVDRSATAAHEADQRSSAATGIASQ 418 Query: 416 GGTVVGQVVSTMSSINESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVV 475 GG VV V+TM I + S +I DIISVIDGIAFQTNILALNAAVE+ARAGEQGRGFAVV Sbjct: 419 GGKVVSDAVATMGEIEKVSAQIGDIISVIDGIAFQTNILALNAAVESARAGEQGRGFAVV 478 Query: 476 ASEVRSLAQRSATAAKEIKQLIDDSVQKVETGSQLVAQAGSTMDEVVSSVKRVTDIVGEI 535 A EVR+LAQRSA AA+E+K L++ ++ +V GSQ V QAG TM ++V+ V + +I Sbjct: 479 AHEVRNLAQRSAGAAREVKDLVEATISRVAAGSQQVRQAGGTMRDIVTHTDDVQSAIADI 538 Query: 536 SSASQEQSAGISEVGNAVTLMDEATQQNAALVEQAAAAAKSLQEQAAHLAEVVAGFKLD 594 + + EQ+ GI EV AV +D QQNAALVE++AAA+ +LQ+QA LA +A F++D Sbjct: 539 ARTTTEQTRGIQEVNQAVIQLDGMVQQNAALVEESAAASSTLQQQANVLAATIARFRID 597 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 381 bits (978), Expect = e-106, Method: Compositional matrix adjust. Identities = 219/339 (64%), Positives = 267/339 (78%), Gaps = 4/339 (1%) Query: 267 MTLSVVLAL-VAIAAAAVLLSYTITR-LLRRLGVVRDAMEDIASGDGDLTRRLDTNGKDE 324 M + V LA +A AA++L Y + R +++ L E++A+GD LT R++ + +DE Sbjct: 190 MAIEVTLACSMAAVLAAIILGYLMARSIVKPLTEAVRVAENVAAGD--LTTRIEPHSRDE 247 Query: 325 LAQISRAFNHFADKISRTLLDIRRASESVKVSSSEIASGNMDLSARTEQQAGSLEETASA 384 Q+ +A D + + +RR +ES+ +S EIASGN+DLSARTEQQAGSLEETASA Sbjct: 248 TGQLMQALRKMNDNLIEIVSGVRRGTESITTASGEIASGNLDLSARTEQQAGSLEETASA 307 Query: 385 MEELTSTVKQNADNARQANQLAVSASDVAVHGGTVVGQVVSTMSSINESSRKIVDIISVI 444 MEE+TSTV+QNADNARQANQ+AVSAS++A+ GG +VG+VV TM IN+SSRKIVDII VI Sbjct: 308 MEEMTSTVRQNADNARQANQMAVSASEIALQGGQIVGRVVHTMDEINQSSRKIVDIIGVI 367 Query: 445 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIKQLIDDSVQKV 504 DGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA AAKEIK LI DSV KV Sbjct: 368 DGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALIADSVGKV 427 Query: 505 ETGSQLVAQAGSTMDEVVSSVKRVTDIVGEISSASQEQSAGISEVGNAVTLMDEATQQNA 564 E GS LVAQAG+TM++VVSSV+ VTDIV EIS+AS EQS+GI E+ AVT MDE TQQNA Sbjct: 428 EGGSALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQSSGIEEINRAVTQMDEGTQQNA 487 Query: 565 ALVEQAAAAAKSLQEQAAHLAEVVAGFKLDESAHAAPRA 603 ALVEQAAAAAKS+QEQA L + ++ FKL++ A + P A Sbjct: 488 ALVEQAAAAAKSMQEQAVRLTQSISIFKLEQGAASIPAA 526 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.312 0.125 0.333 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,517,609 Number of extensions: 55455 Number of successful extensions: 623 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 351 Number of HSP's successfully gapped: 72 Length of query: 673 Length of database: 1,619,870 Length adjustment: 92 Effective length of query: 581 Effective length of database: 1,184,250 Effective search space: 688049250 Effective search space used: 688049250 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 134 (56.2 bits)