BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3123.p
         (267 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312457|ref|YP_003776549.1| uracil DNA glycosylase [Herbasp...   433   e-123

>gi|300312457|ref|YP_003776549.1| uracil DNA glycosylase
           [Herbaspirillum seropedicae SmR1]
          Length = 266

 Score =  433 bits (1114), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 228/267 (85%), Positives = 243/267 (91%), Gaps = 2/267 (0%)

Query: 1   MPTATAFPALPACLLELIQTAHPSWHAALRAGLEAIQQADPAYLGTLAQDDYLPTEGRLF 60
           MP  +A  +LPA L +LI TAHPSWHAALRAGL+AI QADP YL  LA D YLPTEGRLF
Sbjct: 1   MPAPSA--SLPAALADLIPTAHPSWHAALRAGLQAIAQADPVYLDVLATDHYLPTEGRLF 58

Query: 61  AAFQQPLDQVRYVLVGEGPYPRAASATGVCFMDGAVGSLWSDKGLSKQVNRATSLRNFMK 120
           AAFQQP+D+VRYVLVGEGPYPRAASATGVCFMDGAVGSLWS+KGLSKQVNRATSLRNFMK
Sbjct: 59  AAFQQPMDRVRYVLVGEGPYPRAASATGVCFMDGAVGSLWSEKGLSKQVNRATSLRNFMK 118

Query: 121 MLLVADGRLQAGNTSGDALAGIAAQAQADVQGTIQTLADLQDNLTAQGFLLLNASLVFRA 180
           MLLVADGR+QAG TSGDALA +AAQAQADV GTIQTLADLQDNLTAQGFLLLNASLVFR 
Sbjct: 119 MLLVADGRVQAGQTSGDALADVAAQAQADVAGTIQTLADLQDNLTAQGFLLLNASLVFRT 178

Query: 181 HVAPLKDARAWKPFFETVLRALAEHGQAQRRPLPTLVLWGKIAEQLHSLPLVEQFPRAVA 240
           HVAP+KDA+AWKPFFETVLRALAEHG +Q + LPTLVLWGKIAEQL SLPLV+ FPRAVA
Sbjct: 179 HVAPVKDAKAWKPFFETVLRALAEHGASQGKTLPTLVLWGKIAEQLDSLPLVQAFPRAVA 238

Query: 241 EHPYNLSFIEHSGMQALFGAMQLLKKK 267
           EHPYNLSFIEHSGMQALFGAM LL K+
Sbjct: 239 EHPYNLSFIEHSGMQALFGAMHLLDKR 265


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 811,687
Number of extensions: 32399
Number of successful extensions: 114
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 183
Effective length of database: 1,222,130
Effective search space: 223649790
Effective search space used: 223649790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)