BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3122.p
         (693 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312456|ref|YP_003776548.1| excinuclease ABC subunit B [Her...  1398   0.0  

>gi|300312456|ref|YP_003776548.1| excinuclease ABC subunit B
           [Herbaspirillum seropedicae SmR1]
          Length = 693

 Score = 1398 bits (3618), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 681/693 (98%), Positives = 689/693 (99%)

Query: 1   MAELTPINPELDESKFVTFPDSPFKLYQVFPPAGDQPAAIDKLVEGVNDGLFYQTLLGVT 60
           MAELTPIN ELDESKFVTFPDSPFKLYQVFPPAGDQPAAIDKLVEGVNDGLFYQTLLGVT
Sbjct: 1   MAELTPINTELDESKFVTFPDSPFKLYQVFPPAGDQPAAIDKLVEGVNDGLFYQTLLGVT 60

Query: 61  GSGKTYTMANTIARLGRPAIVFAPNKTLAAQLYSEFREFFPHNAVEYFVSYYDYYQPEAY 120
           GSGKTYTMANTIARLGRPAIVFAPNKTLAAQLYSEFREFFPHNAVEYFVSYYDYYQPEAY
Sbjct: 61  GSGKTYTMANTIARLGRPAIVFAPNKTLAAQLYSEFREFFPHNAVEYFVSYYDYYQPEAY 120

Query: 121 VPQRDLFIEKDSSINEHIEQMRLSCTKSLMERRDVVIVATVSAIYGIGNPNEYHQMILTL 180
           VPQRDLFIEKDSSINEHIEQMRLSCTKSLMERRDVVIVATVSAIYGIGNPNEYHQMILTL
Sbjct: 121 VPQRDLFIEKDSSINEHIEQMRLSCTKSLMERRDVVIVATVSAIYGIGNPNEYHQMILTL 180

Query: 181 RAKDKVSQRDVIARLIQMQYTRNEVDFGRGTFRVRGDTIDVFPAEHAELAVRIETFDDEI 240
           RAKDKVSQRDVIARLIQMQYTRNEVDFGRGTFRVRGDTIDVFPAEHAELAVRIETFDDEI
Sbjct: 181 RAKDKVSQRDVIARLIQMQYTRNEVDFGRGTFRVRGDTIDVFPAEHAELAVRIETFDDEI 240

Query: 241 DSLQLFDPLTGRVRQKIPRFTIYPGSHYVTPRSTVLRAIETIKEELAERLEFFRKENKLI 300
           DSLQLFDPLTGRVRQKIPRFTIYPGSHYVTPRSTVLRAIETIKEELAERLEFFRKENKLI
Sbjct: 241 DSLQLFDPLTGRVRQKIPRFTIYPGSHYVTPRSTVLRAIETIKEELAERLEFFRKENKLI 300

Query: 301 EEQRLEQRTRFDIEMMTEIGFTKGIENYSRHLSGGKPGDPPPTLVDYLPKDALMFLDESH 360
           EEQRLEQRTRFDIEMMTEIGFTKGIENYSRHLSG KPGDPPPTLVDYLPKDA+MFLDESH
Sbjct: 301 EEQRLEQRTRFDIEMMTEIGFTKGIENYSRHLSGAKPGDPPPTLVDYLPKDAIMFLDESH 360

Query: 361 VLIGQLNGMYNGDRARKVNLVDYGFRLPSALDNRPLKFDEFEKKMRQTVFVSATPADYEN 420
           VLIGQLNGMYNGDRARKVNLVDYGFRLPSALDNRPLKFDEFEKKMRQT+FVSATPADYEN
Sbjct: 361 VLIGQLNGMYNGDRARKVNLVDYGFRLPSALDNRPLKFDEFEKKMRQTIFVSATPADYEN 420

Query: 421 THADQVVEQVVRPTGLVDPVIAVRPATTQVDDLMQEIHDRIAKNERVLVTTLTKRMAEQL 480
           THADQVVEQVVRPTGLVDP+IAVRPATTQVDDLMQEI+DRIAK+ERVLVTTLTKRMAEQL
Sbjct: 421 THADQVVEQVVRPTGLVDPIIAVRPATTQVDDLMQEINDRIAKDERVLVTTLTKRMAEQL 480

Query: 481 TEFLSDNGIKVRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILD 540
           TEFLSDNGIKVRYLHSDIDTVERVEIIRDLRLGTFDV+VGINLLREGLDIPEVSLVAILD
Sbjct: 481 TEFLSDNGIKVRYLHSDIDTVERVEIIRDLRLGTFDVVVGINLLREGLDIPEVSLVAILD 540

Query: 541 ADKEGFLRSERSLIQTIGRAARNLNGMAILYGDVVTDSMHKAISETERRRAKQLAFNEAN 600
           ADKEGFLRSERSLIQTIGRAARNLNGMAILYGDVVTDSMHKAI ETERRRAKQLAFN AN
Sbjct: 541 ADKEGFLRSERSLIQTIGRAARNLNGMAILYGDVVTDSMHKAIGETERRRAKQLAFNAAN 600

Query: 601 GIVPTGIKKEIRELIDGIFNPAQARTELMVAEEKKNYESMSEKQISKEIKRLEKQMQEHA 660
           GIVPTGIKKEIRELIDG+FNPAQARTEL+VAEEKKNYESMSEKQISKEIKRLEKQMQEHA
Sbjct: 601 GIVPTGIKKEIRELIDGVFNPAQARTELLVAEEKKNYESMSEKQISKEIKRLEKQMQEHA 660

Query: 661 KNLEFEKAAAARDQLHLLKQQLFGAPGSDTAVA 693
           KNLEFEKAAAARDQLHLLKQQLFGAPGSDTAVA
Sbjct: 661 KNLEFEKAAAARDQLHLLKQQLFGAPGSDTAVA 693


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,074,286
Number of extensions: 87239
Number of successful extensions: 303
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 305
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 601
Effective length of database: 1,184,250
Effective search space: 711734250
Effective search space used: 711734250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 134 (56.2 bits)