BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3120.p
         (344 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312454|ref|YP_003776546.1| selenophosphate synthase [Herba...   675   0.0  

>gi|300312454|ref|YP_003776546.1| selenophosphate synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 348

 Score =  675 bits (1741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/344 (96%), Positives = 338/344 (98%)

Query: 1   MSDPIRLTQYSHGAGCGCKISPQVLEVILAGSGAQHLDPKLWVGNASRDDAAVYAIDEER 60
           +S PIRLTQYSHGAGCGCKISPQVLEVILAGSGAQHLDPKLWVGNASRDDAAVYAIDEER
Sbjct: 5   ISAPIRLTQYSHGAGCGCKISPQVLEVILAGSGAQHLDPKLWVGNASRDDAAVYAIDEER 64

Query: 61  GVVSTTDFFMPIVDDPFDFGRIAATNAISDIYAMGGDPLMAIAILGWPVNVLPPEVAREV 120
           GVVSTTDFFMPIVDDPFDFGRIAATNAISDIYAMGGDPLMAIAILGWPVNVLPPEVAR+V
Sbjct: 65  GVVSTTDFFMPIVDDPFDFGRIAATNAISDIYAMGGDPLMAIAILGWPVNVLPPEVARDV 124

Query: 121 VRGGRAACDAAGIPLAGGHSIDAPEPIFGLAVTGVVEKRHMKRNDTASAGCLLYLTKPLG 180
           VRGGRAACDAAGIPLAGGHSIDAPEPIFGLAVTGVVEKRHMKRNDTA AG LLYLTKPLG
Sbjct: 125 VRGGRAACDAAGIPLAGGHSIDAPEPIFGLAVTGVVEKRHMKRNDTAIAGSLLYLTKPLG 184

Query: 181 IGILTTAEKKGKLRPDDVGVARDWMCQLNQPGSRFGKLAGVAAMTDVTGFGLLGHLVEMC 240
           IGILTTAEKKGKLR ++VG ARDWMC+LNQPGSRFGKLAGV AMTDVTGFGLLGHLVEMC
Sbjct: 185 IGILTTAEKKGKLRAEEVGAARDWMCKLNQPGSRFGKLAGVTAMTDVTGFGLLGHLVEMC 244

Query: 241 EGSGVSARIQHALVPSLPGVPYYLAEGCVPGGTGRNFESYGSKISPLSESQKHLLCDPQT 300
           EGSGVSARIQHALVPSLPGVPYYLAEGCVPGGTGRNFESYGSKISPLSESQKHLLCDPQT
Sbjct: 245 EGSGVSARIQHALVPSLPGVPYYLAEGCVPGGTGRNFESYGSKISPLSESQKHLLCDPQT 304

Query: 301 SGGLLVAVRPEANPEFLATAAALGLELAPIGELVERQRYAVEVL 344
           SGGLLVAVRP+ANPEFLATAAALGLELAPIGELVERQRYAVEVL
Sbjct: 305 SGGLLVAVRPDANPEFLATAAALGLELAPIGELVERQRYAVEVL 348


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.138    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,218,392
Number of extensions: 57596
Number of successful extensions: 150
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 258
Effective length of database: 1,212,660
Effective search space: 312866280
Effective search space used: 312866280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)