BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3115.p
         (374 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312449|ref|YP_003776541.1| 6-phosphogluconolactonase [Herb...   582   e-167

>gi|300312449|ref|YP_003776541.1| 6-phosphogluconolactonase
           [Herbaspirillum seropedicae SmR1]
          Length = 365

 Score =  582 bits (1500), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 287/352 (81%), Positives = 313/352 (88%)

Query: 23  LNAISPLKPATSAAGTTTVAYVSNADSQDIYVLQINDDGSVELIERVDTGSNVMPLAISP 82
           L A S L  ATS AG  T+AYVS+ADSQDIYVL++N+DGSV LI++VDTGS VMPLAISP
Sbjct: 14  LIATSALSLATSHAGAATIAYVSHADSQDIYVLRLNNDGSVNLIDKVDTGSTVMPLAISP 73

Query: 83  DRKRLYASLRAEPYSVVSYAIDAGSGKLKALSRVPLADNMANLATDRSGRYLLAASYFGH 142
           DRK LYASLR EPY+V SYAID  SGKLKALS+ PLADNMAN+ATDRSGRYLLAASYFG+
Sbjct: 74  DRKYLYASLRREPYAVASYAIDPASGKLKALSKAPLADNMANIATDRSGRYLLAASYFGN 133

Query: 143 KISVNAIGSDGTVQAPPLAVIATGKNAHSVQLAPDNAFAFASNLGSDMILQYRFDAATGA 202
           KISVNAIGSDG VQ PPLAVI TGKNAHSVQ+ P NAF FASNLGSD+ILQYRFD A+GA
Sbjct: 134 KISVNAIGSDGAVQTPPLAVIPTGKNAHSVQVDPANAFVFASNLGSDVILQYRFDPASGA 193

Query: 203 VTPNTPPAVATKAGAGPRHFVFAPDQRFVYAINELDATVDTYAYDRQQGHLTWQASDSAL 262
           VTPNTPP+VA+KAGAGPRHFVF+PDQRF+Y  NELDATV TYAYDRQ G LT   SDSAL
Sbjct: 194 VTPNTPPSVASKAGAGPRHFVFSPDQRFLYCANELDATVSTYAYDRQAGTLTLLGSDSAL 253

Query: 263 PDGFTSSAALAAADLHLSPDGRFLYASERASNTLTGYRVERASGRLTRIFNIPTETQPRA 322
           P+GF SS  LAAADLHL+PDGRFLYA+ER SNTLTGYRV+RASG+LTRI NIPTETQPRA
Sbjct: 254 PEGFQSSEQLAAADLHLTPDGRFLYATERTSNTLTGYRVDRASGKLTRILNIPTETQPRA 313

Query: 323 FHIDPQGRYLLAVGQQAGLTSYAIDHDSGALTPLFRYTLGRNPNWVEIIELP 374
           F+IDPQGRYLLAVGQ+AGLTSYAID  SG LTPLFRYTLGRNPNWVEII+LP
Sbjct: 314 FNIDPQGRYLLAVGQKAGLTSYAIDAASGTLTPLFRYTLGRNPNWVEIIDLP 365


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.132    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,135,815
Number of extensions: 46762
Number of successful extensions: 181
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 287
Effective length of database: 1,207,925
Effective search space: 346674475
Effective search space used: 346674475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)