BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3114.p (594 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312448|ref|YP_003776540.1| methyl-accepting chemotaxis tra... 856 0.0 gi|300310584|ref|YP_003774676.1| methyl-accepting chemotaxis tra... 401 e-113 gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sen... 394 e-110 gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra... 392 e-110 gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis pro... 382 e-107 >gi|300312448|ref|YP_003776540.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 596 Score = 856 bits (2212), Expect = 0.0, Method: Compositional matrix adjust. Identities = 475/603 (78%), Positives = 515/603 (85%), Gaps = 16/603 (2%) Query: 1 MRNLTVRFSLMSALALFSIMIVVGAAVGIFALGRANQATEYVHEIAEHVIIINDAYKDST 60 MRNLTVRFSLMSALALFS MIVVGA VGIFALGRAN ATEYVHEI E ++INDAYKD+T Sbjct: 1 MRNLTVRFSLMSALALFSCMIVVGAGVGIFALGRANHATEYVHEITERALLINDAYKDTT 60 Query: 61 RTRSALTRAYANLKEKNDPAIAEGALKSAQGSYERGLKFVDEFSKLPDLAGEEPVVKKEL 120 RTR+A R YA L EK D A+ + ALKSA+ +YER LK++DE++KLPDL G++P K EL Sbjct: 61 RTRAAHGRMYATLMEKGDQAVIDSALKSAEMTYERSLKYLDEYAKLPDLEGQDPATKTEL 120 Query: 121 IESARSLSELLMKASGLLKAGDASAYSELNDKQINPAGARFSKALDEFQKRAMKLNDTAA 180 +ESA++L+E+L KA+ LLKAGDA+ YS+LN+ I+ GARFS ALD +QKRAM+LND Sbjct: 121 LESAKALNEVLKKATDLLKAGDAAGYSQLNNNFISKGGARFSTALDAYQKRAMELNDNVT 180 Query: 181 NERQREYSMVVWLVVVGLIGAMFLVIGVHFMLRNIVLTPLNRAVHLLDLVANGDLTTKVE 240 +RQREY++VVWLVV GLIGAMFLV+GVHF+LRNIVLTPLNRAVHLLDLVANGDLTTKVE Sbjct: 181 TQRQREYNLVVWLVVTGLIGAMFLVVGVHFLLRNIVLTPLNRAVHLLDLVANGDLTTKVE 240 Query: 241 VQSSNEIGRLFAAIRSMQQALLTTVSRVRSSSDSIDTSAKEIAAGNMDLSSRTEQQASSL 300 V SSNEIGRLF+AIRSMQQALLTTVSRVRSSSDSIDTSAKEIAAGNMDLSSRTEQQASSL Sbjct: 241 VASSNEIGRLFSAIRSMQQALLTTVSRVRSSSDSIDTSAKEIAAGNMDLSSRTEQQASSL 300 Query: 301 EETAASMEQLTGTVKQNADNALQANQLAHSASSTASKGGEVVAQVVDTMQAINASSRKIV 360 EETAASME+LTGTVKQNA+NALQANQLAHSASSTASKGGEVV+QVVDTMQAIN SSRKIV Sbjct: 301 EETAASMEELTGTVKQNAENALQANQLAHSASSTASKGGEVVSQVVDTMQAINDSSRKIV 360 Query: 361 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKSLID 420 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKSLID Sbjct: 361 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKSLID 420 Query: 421 DSVDKVEAGSQLVEQAGATMSEVVTSVQRVTDIVGEIAEASREQSTGIEQVNRAITQMDE 480 DSV+KVEAGSQLVEQAGATMSEVVTSVQRVTDIVGEIAEASREQSTGIEQVNRAITQMDE Sbjct: 421 DSVEKVEAGSQLVEQAGATMSEVVTSVQRVTDIVGEIAEASREQSTGIEQVNRAITQMDE 480 Query: 481 VTQQNAALVEQAAAAAQSLQAQATNLVGAVSIFKINAQQAASAPKPRPAPVAPVAPPPAA 540 VTQQNAALVE+AAAAAQSLQAQATNLVGAVSIFKI A Q A A K P + P AA Sbjct: 481 VTQQNAALVEEAAAAAQSLQAQATNLVGAVSIFKIEAHQVAPAGK-------PASKPRAA 533 Query: 541 PAPAPVA---------AVTAAPAAAKAAPKLPPAKLPPAKPAKAAPAAPASRLKDDAQDW 591 PA PV A A + A A P P KAA +SR KDDAQDW Sbjct: 534 PAARPVTTPQVAAPAAPAVTAAAPSSPASAPKSAPKLPPAPPKAAAKPASSRAKDDAQDW 593 Query: 592 EEF 594 EEF Sbjct: 594 EEF 596 >gi|300310584|ref|YP_003774676.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 596 Score = 401 bits (1030), Expect = e-113, Method: Compositional matrix adjust. Identities = 250/548 (45%), Positives = 348/548 (63%), Gaps = 30/548 (5%) Query: 1 MRNLTVRFSLMSALALFSIMIVVGAAVGIFALGRA-NQATEYVHEIAEHVIIINDAYKDS 59 ++NL+++ L A+ + + ++V A G+ + A + + E + ++ Sbjct: 3 IKNLSIKAQLAIAILVLAALLVAIGASGLLGMSAAVSINAQLSQERLPKTVAADNTLIWI 62 Query: 60 TRTRSALTRAYANLKEKNDPAIAEGALKSAQGSYERGLKFVDEFSKLPDLAGEEPVVKKE 119 R R++L +A NDPA AE + + L++ +++ LP E V+ K+ Sbjct: 63 GRQRTSLDQAALT----NDPAWAERMYGMDANARKEALQWWGKYTALPQTE-EGRVLVKK 117 Query: 120 LIESARSLSELLMKASGLLKAGDASAYSELNDK--QINPAGARFSKALDEFQKRAMKLND 177 + + + L + + ++KAGD A ++ K I A +AL +++ + Sbjct: 118 VSDGIDKTEQELTRFAEVIKAGDRQAIADQARKVGTIYTAMQLDGQALSKYETEQAAQSA 177 Query: 178 TAANER---QREYSMVVWLVVVGLIGAMFLVIGVHFMLRNIVLTPLNRAVHLLDLVANGD 234 A+ R R +S+V +V GL+ A + + LR + P+ RA+ D +A+GD Sbjct: 178 GASMARYEASRNFSIVA--IVAGLLLAFY----SWWSLRRAIGEPMQRALRHFDAIASGD 231 Query: 235 LTTKVEVQSSNEIGRLFAAIRSMQQALLTTVSRVRSSSDSIDTSAKEIAAGNMDLSSRTE 294 LT V V S NE+G+L ++ MQ++L TV VRS SD+I T+ +EIA+GN+DLSSRTE Sbjct: 232 LTEAVHVHSRNEMGQLLEGLKRMQESLSRTVQAVRSGSDAISTATREIASGNLDLSSRTE 291 Query: 295 QQASSLEETAASMEQLTGTVKQNADNALQANQLAHSASSTASKGGEVVAQVVDTMQAINA 354 QQA+SLEETA+SME+LT TVK NADNA QA LA +AS+ A+ G VV +VV TM+ I A Sbjct: 292 QQAASLEETASSMEELTSTVKHNADNARQATTLAVNASTIAADGNAVVGRVVQTMEEIRA 351 Query: 355 SSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKE 414 SS KI DI+S+IDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRS++AAKE Sbjct: 352 SSAKITDIVSIIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRALAQRSSSAAKE 411 Query: 415 IKSLIDDSVDKVEAGSQLVEQAGATMSEVVTSVQRVTDIVGEIAEASREQSTGIEQVNRA 474 IK LI SVD+V+AGS+LV QAG TMS+V+ +VQRVTDI+ EI+ AS EQS GI+QV+ A Sbjct: 412 IKELIMHSVDRVQAGSELVGQAGDTMSDVINAVQRVTDIMSEISAASNEQSAGIDQVSHA 471 Query: 475 ITQMDEVTQQNAALVEQAAAAAQSLQAQATNLVGAVSIFKINAQQAASAPKPRPAPVAPV 534 +TQMDE TQQNAALVEQA+AAA+SL+ QA L+ V+IF++N P Sbjct: 472 VTQMDEATQQNAALVEQASAAAKSLEQQAQALMQEVAIFRVNG-------------AGPT 518 Query: 535 APPPAAPA 542 PPAA A Sbjct: 519 VKPPAAAA 526 >gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sensory transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 585 Score = 394 bits (1012), Expect = e-110, Method: Compositional matrix adjust. Identities = 244/423 (57%), Positives = 299/423 (70%), Gaps = 24/423 (5%) Query: 181 NERQREYSMVVWLVVVGLIG----AMFLVIGVHFMLRNIVLTPLNRAVHLLDLVANGDLT 236 ER E + + + LIG A+ L + + + L N + PL AV L VA+GDLT Sbjct: 178 GERAEEAAALRSVTSTTLIGGGAIALMLAVLLAWWLANNITRPLALAVQLARRVASGDLT 237 Query: 237 TKVEVQSSNEIGRLFAAIRSMQQALLTTVSRVRSSSDSIDTSAKEIAAGNMDLSSRTEQQ 296 ++EV+S +E G L A++ M ++L+ VS VR ++ I T++ EIA GN+DLSSRTEQQ Sbjct: 238 ARIEVRSRDETGALLGALKDMNESLVRIVSGVRRGTEMIATASSEIATGNLDLSSRTEQQ 297 Query: 297 ASSLEETAASMEQLTGTVKQNADNALQANQLAHSASSTASKGGEVVAQVVDTMQAINASS 356 ASSLEETA+SME+LT TV+QN NA +AN++A +AS AS GG VVA+VVDTM+ IN SS Sbjct: 298 ASSLEETASSMEELTSTVQQNTANAREANRMAQAASDIASSGGGVVARVVDTMEEINDSS 357 Query: 357 RKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIK 416 RKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIK Sbjct: 358 RKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIK 417 Query: 417 SLIDDSVDKVEAGSQLVEQAGATMSEVVTSVQRVTDIVGEIAEASREQSTGIEQVNRAIT 476 +LI DSV KVE+GS LV +AG TM E+V SVQRVT+++ EI+ A EQ +GIEQV++A+ Sbjct: 418 ALISDSVAKVESGSLLVNEAGDTMREIVESVQRVTNMINEISAAGEEQRSGIEQVSQAVG 477 Query: 477 QMDEVTQQNAALVEQAAAAAQSLQAQATNLVGAVSIFKINAQQAASAPKPRPAPVAPVAP 536 QMD+VTQQNAALVEQAAAA+QSLQ QA L AVS+F++ A QA VAP Sbjct: 478 QMDQVTQQNAALVEQAAAASQSLQEQAQELAQAVSVFRLEAGQA-----------LEVAP 526 Query: 537 PPAAPAPAPVAAVTAAPAAAKAAPKLP----PAKLPPAKPAKAAPAAPASRLKD-DAQDW 591 PAPA VAA + A + +LP P+ P A P APA+ SRL DA +W Sbjct: 527 E---PAPASVAASRSGVRPATRSSRLPSPVGPSASPSASPMHPAPAS-GSRLSSADADEW 582 Query: 592 EEF 594 F Sbjct: 583 VTF 585 >gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 392 bits (1008), Expect = e-110, Method: Compositional matrix adjust. Identities = 267/554 (48%), Positives = 364/554 (65%), Gaps = 48/554 (8%) Query: 2 RNLTVRFSLMSALALFSIMIVVGAAVGIFALGRANQAT-EYVHEIAEHVIIINDAYKDST 60 R LT+ F+L + FSI+I A +G++ L QAT E + E + ++ D Y T Sbjct: 11 RRLTLGFAL---ILTFSIII---AGIGLWRLDHVAQATREMMAEPLKTERLMADWY---T 61 Query: 61 RTRSALTRAYANLKEKNDPAI-----AEGALKS-AQGSYERGLKFVDEFSKLPDLAGEEP 114 + + R A + + +DPA+ AE A S + G Y+ K V+ P+ Sbjct: 62 NLVAGIRRTIA-IAKSSDPALGPYFAAEVAASSKSSGEYQ---KQVEALLSTPE------ 111 Query: 115 VVKKELIESARSLSELLMKASGLLKAGDASAYSE----LNDKQINPAGARFS---KALDE 167 +K L + L +L + + + A+ +E + D+ P + + L + Sbjct: 112 --EKALFQKIGELRKLYLSSRDEINKAKAAGNTEEAMRILDQVFVPNATAYQDTMRKLVD 169 Query: 168 FQKRAM-----KLNDTAANERQREYSMVVWLVVVGLIGAMFLVIGVHFMLRNIVLTPLNR 222 FQ++ M +++ AA R + ++++G++ A +L +G+ PL+R Sbjct: 170 FQRKEMDDTAREIDAIAAKSRTLILVLEGLILLLGIVFARYLTLGIT--------KPLHR 221 Query: 223 AVHLLDLVANGDLTTKVEVQSSNEIGRLFAAIRSMQQALLTTVSRVRSSSDSIDTSAKEI 282 AV + VA GDL++++ V S +E G+L +++ M Q+L VS VRS +D+I T++ EI Sbjct: 222 AVDVSRCVAEGDLSSEIAVTSRDETGQLLQSLKDMNQSLRGIVSNVRSGTDTISTASSEI 281 Query: 283 AAGNMDLSSRTEQQASSLEETAASMEQLTGTVKQNADNALQANQLAHSASSTASKGGEVV 342 AAGN+DLSSRTEQQASSL ETA++ME+L TV+QNADNA QA+QLA+SAS+ A +GG VV Sbjct: 282 AAGNLDLSSRTEQQASSLAETASAMEELISTVRQNADNARQASQLANSASAVAEQGGGVV 341 Query: 343 AQVVDTMQAINASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR 402 +QVVDTM AINASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR Sbjct: 342 SQVVDTMGAINASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR 401 Query: 403 SLAQRSAAAAKEIKSLIDDSVDKVEAGSQLVEQAGATMSEVVTSVQRVTDIVGEIAEASR 462 +LAQRSA+AAKEIK LI+DSV KV+ GS+LVEQAG TM EVV+SV+RVTDIV EI+ AS Sbjct: 402 TLAQRSASAAKEIKELINDSVGKVDDGSRLVEQAGNTMQEVVSSVRRVTDIVAEISAAST 461 Query: 463 EQSTGIEQVNRAITQMDEVTQQNAALVEQAAAAAQSLQAQATNLVGAVSIFKINAQQAAS 522 EQ+ GIEQ+N AITQMD+VTQQNAALVE+AAAAA S+Q QA L+ VS+F+++ ++ Sbjct: 462 EQTHGIEQINLAITQMDQVTQQNAALVEEAAAAAASMQTQAGRLMQMVSVFRLSEREPLV 521 Query: 523 APKPRPAPVAPVAP 536 + P +PV P Sbjct: 522 RREIDVTPSSPVLP 535 >gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 516 Score = 382 bits (981), Expect = e-107, Method: Compositional matrix adjust. Identities = 227/356 (63%), Positives = 279/356 (78%), Gaps = 10/356 (2%) Query: 165 LDEFQKRAMKLNDTAANERQREYSMVVW----LVVVGLIGAMFLV-IGVHFMLRNIVLTP 219 +DE +K+ND A ++R + + V+ L ++GL+ A+ ++ +G+ M+ V P Sbjct: 164 MDEI----IKVND-AGSKRSDDMAEQVYRSATLWIIGLLAAIVVIALGLAVMVARAVSRP 218 Query: 220 LNRAVHLLDLVANGDLTTKVEVQSSNEIGRLFAAIRSMQQALLTTVSRVRSSSDSIDTSA 279 LN AV + + VA GDLT + S++E G L ++R+M +L V VR+ +D+I T++ Sbjct: 219 LNEAVAVAERVAQGDLTMDIRATSTDETGMLMHSLRAMNDSLQQIVGEVRTGTDTITTAS 278 Query: 280 KEIAAGNMDLSSRTEQQASSLEETAASMEQLTGTVKQNADNALQANQLAHSASSTASKGG 339 +EIA GN+DLSSRTE+QA SLEETA++ME+LT TVKQNADNA QANQLA SAS A++GG Sbjct: 279 QEIATGNLDLSSRTEEQAGSLEETASAMEELTATVKQNADNARQANQLAASASDIATQGG 338 Query: 340 EVVAQVVDTMQAINASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAS 399 VV QVV TM+ I SS +I DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAS Sbjct: 339 AVVGQVVQTMEGITESSNRIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAS 398 Query: 400 EVRSLAQRSAAAAKEIKSLIDDSVDKVEAGSQLVEQAGATMSEVVTSVQRVTDIVGEIAE 459 EVRSLAQRSA+AAKEIK LIDDSV+KV AGSQLVE+AGATMSEVV SV+RVTD+V EI+ Sbjct: 399 EVRSLAQRSASAAKEIKQLIDDSVEKVGAGSQLVERAGATMSEVVASVRRVTDVVAEISA 458 Query: 460 ASREQSTGIEQVNRAITQMDEVTQQNAALVEQAAAAAQSLQAQATNLVGAVSIFKI 515 AS EQSTGIE++NRAITQMDEVTQQNAALVE+AAAAAQSLQ QA L VS+FK+ Sbjct: 459 ASNEQSTGIEEINRAITQMDEVTQQNAALVEEAAAAAQSLQDQAARLSQVVSVFKL 514 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.312 0.124 0.324 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,127,189 Number of extensions: 36542 Number of successful extensions: 478 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 248 Number of HSP's successfully gapped: 71 Length of query: 594 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 503 Effective length of database: 1,188,985 Effective search space: 598059455 Effective search space used: 598059455 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 133 (55.8 bits)