BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3112.p (255 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312446|ref|YP_003776538.1| GntR family transcription regul... 483 e-138 gi|300313520|ref|YP_003777612.1| transcription regulator protein... 140 1e-34 gi|300311570|ref|YP_003775662.1| GntR family transcription regul... 112 2e-26 gi|300312368|ref|YP_003776460.1| GntR family transcription regul... 112 3e-26 gi|300313885|ref|YP_003777977.1| GntR family transcription regul... 109 2e-25 >gi|300312446|ref|YP_003776538.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 255 Score = 483 bits (1244), Expect = e-138, Method: Compositional matrix adjust. Identities = 236/255 (92%), Positives = 247/255 (96%) Query: 1 MDVSDTPNPLLRPRRKPQSLSQEVVATLSAMIDNGSIKPGEKLPTESEIMQTQGVSRTVV 60 MDVSDTPNPLLRPRRKPQSLSQEVVA L+AMI NGS+ PG+KLPTESEIMQTQGVSRTVV Sbjct: 1 MDVSDTPNPLLRPRRKPQSLSQEVVAALTAMISNGSLTPGDKLPTESEIMQTQGVSRTVV 60 Query: 61 REAISRLQAAGLVETRHGIGTFVLEAKKGSNINIDPATITTMRDLLALLELRISLETETA 120 REAISRLQAAGLVETRHGIGTFVLEAKKG NINIDPATITTMRDLLALLELRISLETETA Sbjct: 61 REAISRLQAAGLVETRHGIGTFVLEAKKGGNINIDPATITTMRDLLALLELRISLETETA 120 Query: 121 GLAAARRSEEQLQEIREALNLFRENQQNGGDTVGPDFRFHFAIANATGNRYFIEIISHLG 180 GLAAARR+EEQLQEIREAL+LFR NQQ GGDTVGPDFRFHFAIANATGNRYFIEIISHLG Sbjct: 121 GLAAARRTEEQLQEIREALDLFRANQQGGGDTVGPDFRFHFAIANATGNRYFIEIISHLG 180 Query: 181 MGVIPRKRINTAELAHDQQSSYLDRVQREHEDIFDAIARGDSEAARAAMRNHLTNSRERL 240 MGVIPRKRINTAELAHDQQ+SYLDRVQREHEDI++AIARGD+EAARAAMRNHLTNSRERL Sbjct: 181 MGVIPRKRINTAELAHDQQASYLDRVQREHEDIYEAIARGDAEAARAAMRNHLTNSRERL 240 Query: 241 RRAQQEAESGATTGA 255 RRAQQEAESG+ + A Sbjct: 241 RRAQQEAESGSASAA 255 >gi|300313520|ref|YP_003777612.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 233 Score = 140 bits (353), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 93/227 (40%), Positives = 123/227 (54%), Gaps = 2/227 (0%) Query: 18 QSLSQEVVATLSAMIDNGSIKPGEKLPTESEIMQTQGVSRTVVREAISRLQAAGLVETRH 77 Q+LS V L ID G+ G KLPTE+ + Q GVSRTVVREAI+RL+ G+VE R Sbjct: 8 QALSDTVARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHEGVVEPRQ 67 Query: 78 GIGTFVLEAKKGSNINIDPATITTMRDLLALLELRISLETETAGLAAARRSEEQLQEIRE 137 G G FV E + ID +++ +L ++ELR ++E E A AA RRS E LQ I Sbjct: 68 GSGVFVTEQAGIKPLRIDYTEVSSPEAVLQIVELRRAIEAEVAAQAAKRRSAEDLQAIEA 127 Query: 138 ALNLFRENQQNGGDTVGPDFRFHFAIANATGNRYFIEIISHLGMGVIPRKRINTAELAHD 197 AL + GGD V D FH A+A AT N YFI+ + L + + A Sbjct: 128 ALAQIGVDVAAGGDGVAADVAFHRALAQATRNPYFIKTLEFLSQYLEAATAVTRGNEARY 187 Query: 198 QQSSYLDRVQREHEDIFDAIARGDSEAARAAMRNHLTNSRERLRRAQ 244 + S +V+ EHE I +AI GD AAR A + H+ N+ RL + Q Sbjct: 188 EDFS--RQVREEHEAIVEAIRAGDEMAARNAAQTHMFNAARRLSQGQ 232 >gi|300311570|ref|YP_003775662.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 258 Score = 112 bits (281), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 81/228 (35%), Positives = 116/228 (50%), Gaps = 7/228 (3%) Query: 16 KPQSLSQEVVATLSAMIDNGSIKPGEKLPTESEIMQTQGVSRTVVREAISRLQAAGLVET 75 +P+ ++ V TL I G I G KLP+E+++ VSR VVR+A+ RL+ LVE+ Sbjct: 28 RPERFAERVYETLFHAIVEGRITVGSKLPSENDLATLFEVSRPVVRQALDRLREDQLVES 87 Query: 76 RHGIGTFVLEAKKGSNINIDPATITTMRDLLALLELRISLETETAGLAAARRSEEQLQEI 135 G GT+V E + T + ++ LELR+ +E E A +AA RR+ + L + Sbjct: 88 LRGSGTYVKEKPGLAPAQPGAEPETRIGHIMNGLELRLVIEPECAAMAALRRNRQDLDRM 147 Query: 136 REALNLFRENQQNGGDTVGPDFRFHFAIANATGNRYFIEIISHLGMGVIPRKRINTAELA 195 L F + GG DF FH AIA ATGN F++++ L V +N L Sbjct: 148 ERLLEGFEAANRVGGIAHHYDFGFHEAIATATGNLRFVQVMKTLEYDV--SHAVNM--LR 203 Query: 196 HDQQSSYLDRVQ---REHEDIFDAIARGDSEAARAAMRNHLTNSRERL 240 H + R Q EH IF+ I D+E AR AMR H+ N+R R+ Sbjct: 204 HLMHIAPWKRSQDAMDEHRQIFELIRVQDAEGARRAMRGHIENARTRM 251 >gi|300312368|ref|YP_003776460.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 278 Score = 112 bits (280), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 87/233 (37%), Positives = 129/233 (55%), Gaps = 7/233 (3%) Query: 15 RKPQSLSQEVVATLSAMIDNGSIKPGEKLPTESEIMQTQGVSRTVVREAISRLQAAGLVE 74 R +L+ V + L+ I G P +LP+E E+ + VSRTV+REAISRL++ GLV Sbjct: 25 RGKVTLADHVTSVLARQIRAGEFAPETRLPSEMELTERFSVSRTVIREAISRLKSEGLVG 84 Query: 75 TRHGIGTFVLEAKKGSNINIDPATITTMRD----LLALLELRISLETETAGLAAARRSEE 130 +R G GT VL A + +D + RD +L ++ELR +E E A LAA RR+ Sbjct: 85 SRRGSGTVVLPANPATPFRLD-LDVDDGRDSIQAVLRVIELRRGVEGEMAALAAQRRTSA 143 Query: 131 QLQEIREALNLFRENQQNGGDTVGPDFRFHFAIANATGNRYFIEIISHLGMGVIPRKRIN 190 Q I++AL E G D V DF FH AI+NA+ N + ++ L + I Sbjct: 144 QNLAIQQALQAIDEAAAAGRDGVPEDFAFHAAISNASHNPLYTSLVQFLSQFL--HAAIR 201 Query: 191 TAELAHDQQSSYLDRVQREHEDIFDAIARGDSEAARAAMRNHLTNSRERLRRA 243 A + + + ++ +V+ EH + +AI+ GD+EAARAA H+ NS +RL+ A Sbjct: 202 VARMNEARSNEFVQQVRAEHAALAEAISAGDAEAARAAALRHMENSAQRLQAA 254 >gi|300313885|ref|YP_003777977.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 240 Score = 109 bits (273), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 82/235 (34%), Positives = 115/235 (48%), Gaps = 5/235 (2%) Query: 7 PNPLLRPRRKPQSLSQEVVATLSAMIDNGSIKPGEKLPTESEIMQTQGVSRTVVREAISR 66 P L R S S+ + + A I G + KLPTE E+ Q SRT VREA+SR Sbjct: 6 PPSLAASRTHRLSRSEHICRQIIAAILRGELGENRKLPTEVELAQRYEASRTTVREALSR 65 Query: 67 LQAAGLVETRHGIGTFVLEAKKGSNINIDPATITTMRDLLALLELRISLETETAGLAAAR 126 L++ G+V +R G G +V S+ I ++ D+ R +E AG+AA Sbjct: 66 LRSEGIVVSRRGSGNYVQRLPTLSSQG--SPQIASIHDVERYYAFRECVEVGAAGIAATA 123 Query: 127 RSEEQLQEIREALNLFRENQQNGGDTVGPDFRFHFAIANATGNRYFIEIISHLGMGVIPR 186 R +E +Q +R AL + Q G V D H AIA AT N +FI I H +G I R Sbjct: 124 RQDEDVQAMRIALQALQRAQLEGQTGVDEDLALHMAIARATRNPFFISTIEH-ALGPI-R 181 Query: 187 KRINTAE-LAHDQQSSYLDRVQREHEDIFDAIARGDSEAARAAMRNHLTNSRERL 240 + + A+ L Q + + EH+ I AIA G A AAMR H+ ++R R+ Sbjct: 182 QCMELAQNLGSPQDGERIQTIDDEHQAIIQAIAEGSPARAEAAMRAHIGHARLRI 236 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.130 0.351 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 668,906 Number of extensions: 24582 Number of successful extensions: 175 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 156 Number of HSP's successfully gapped: 15 Length of query: 255 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 172 Effective length of database: 1,226,865 Effective search space: 211020780 Effective search space used: 211020780 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)