BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3104.p
         (112 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312438|ref|YP_003776530.1| ferredoxin [2Fe-2S]-type protei...   227   2e-61
gi|300312142|ref|YP_003776234.1| ferredoxin [2Fe-2S]-type protei...   144   2e-36
gi|300312167|ref|YP_003776259.1| ferredoxin [2Fe-2S]-type protei...    69   1e-13

>gi|300312438|ref|YP_003776530.1| ferredoxin [2Fe-2S]-type protein
           [Herbaspirillum seropedicae SmR1]
          Length = 112

 Score =  227 bits (579), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 112/112 (100%), Positives = 112/112 (100%)

Query: 1   MPQIVILPHPVLCPEGSVIDAPAGKTLCDALLDSDIDIEHACEKSCACTTCHVVIREGFE 60
           MPQIVILPHPVLCPEGSVIDAPAGKTLCDALLDSDIDIEHACEKSCACTTCHVVIREGFE
Sbjct: 1   MPQIVILPHPVLCPEGSVIDAPAGKTLCDALLDSDIDIEHACEKSCACTTCHVVIREGFE 60

Query: 61  TLDDPTDKEEDLLDMAWGLEATSRLSCQVVLGEDDLTVEIPKYTINHASENH 112
           TLDDPTDKEEDLLDMAWGLEATSRLSCQVVLGEDDLTVEIPKYTINHASENH
Sbjct: 61  TLDDPTDKEEDLLDMAWGLEATSRLSCQVVLGEDDLTVEIPKYTINHASENH 112


>gi|300312142|ref|YP_003776234.1| ferredoxin [2Fe-2S]-type protein
           [Herbaspirillum seropedicae SmR1]
          Length = 112

 Score =  144 bits (362), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 66/111 (59%), Positives = 82/111 (73%)

Query: 1   MPQIVILPHPVLCPEGSVIDAPAGKTLCDALLDSDIDIEHACEKSCACTTCHVVIREGFE 60
           MP I + PHPVLC EGS  DA +G+ LCDALL + I +EHACEKSCAC+TCHV++ EG++
Sbjct: 1   MPHITVRPHPVLCAEGSSFDARSGQFLCDALLKNGIALEHACEKSCACSTCHVIVHEGYD 60

Query: 61  TLDDPTDKEEDLLDMAWGLEATSRLSCQVVLGEDDLTVEIPKYTINHASEN 111
           +L    D EED L  AWGL A SRL+CQVVL + DL +E+P YT+N A E 
Sbjct: 61  SLAPAGDDEEDQLGRAWGLSAQSRLACQVVLRQQDLVIELPLYTVNLARER 111


>gi|300312167|ref|YP_003776259.1| ferredoxin [2Fe-2S]-type protein
           [Herbaspirillum seropedicae SmR1]
          Length = 101

 Score = 68.6 bits (166), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 54/97 (55%)

Query: 7   LPHPVLCPEGSVIDAPAGKTLCDALLDSDIDIEHACEKSCACTTCHVVIREGFETLDDPT 66
           +P   + P G  I+   G TL  A++ +   I + C+    C  CH+ + EG +++   T
Sbjct: 1   MPVVTIQPSGKTIEVSIGTTLLAAVMKAGEAIANKCQGKAECGACHIFVLEGRKSVSRTT 60

Query: 67  DKEEDLLDMAWGLEATSRLSCQVVLGEDDLTVEIPKY 103
             E   LD   G+ + SRL+CQV++GE+D+T+E+  +
Sbjct: 61  PSENAKLDSIVGVGSKSRLACQVIVGEEDVTLELLNF 97


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.136    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 360,864
Number of extensions: 13519
Number of successful extensions: 26
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 3
Length of query: 112
Length of database: 1,619,870
Length adjustment: 73
Effective length of query: 39
Effective length of database: 1,274,215
Effective search space: 49694385
Effective search space used: 49694385
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 124 (52.4 bits)