BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3102.p
         (443 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312433|ref|YP_003776525.1| hypothetical protein Hsero_3133...   764   0.0  

>gi|300312433|ref|YP_003776525.1| hypothetical protein Hsero_3133
           [Herbaspirillum seropedicae SmR1]
          Length = 437

 Score =  764 bits (1972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/443 (83%), Positives = 402/443 (90%), Gaps = 6/443 (1%)

Query: 1   MNRRDFLRYLGAAGSGAILVPIGLSGCAVVPTGDKSISRASSANHISSGQVAYGAPAARP 60
           MNRRDF+RYLGAA  GAILVP+GLSGCAV PTGDKSISRA+ A      ++AYG+PA R 
Sbjct: 1   MNRRDFIRYLGAATGGAILVPVGLSGCAVAPTGDKSISRATPA------RLAYGSPAPRA 54

Query: 61  HAAGDGAPRMVVVFLRGAVDGLNVVVPYGDGAYYQARPTIAVARPGQANGVLDLTGYFGL 120
           HA GDGAPRM+VVFLRGAVDGLNVVVP+GD  YY+ARP+IAVARPG+ NG LDLTGYFGL
Sbjct: 55  HANGDGAPRMIVVFLRGAVDGLNVVVPHGDPEYYRARPSIAVARPGEPNGALDLTGYFGL 114

Query: 121 HPALQPLMPYWQSGQLAFVHASGSPDSSRSHFEAQDYMETGTPGQHNTPDGWLNRVMDYL 180
           HPAL PL+PYW+SGQLAFVHASGSPD SRSHFEAQDYMETGTPGQH T DGWLNR+M YL
Sbjct: 115 HPALSPLLPYWESGQLAFVHASGSPDGSRSHFEAQDYMETGTPGQHTTRDGWLNRLMGYL 174

Query: 181 PPAQSPLQTINVGNATPRILSGHNVAANLPTGREATRPSMIDQPRWSQVFDPLYGDDDAL 240
           PP++SPLQ +NVG+ATPRILSGHNV ANL TGR ATRP +IDQPR  Q + PLY  DDA+
Sbjct: 175 PPSESPLQALNVGDATPRILSGHNVVANLQTGRAATRPGLIDQPRMMQAYGPLYEGDDAI 234

Query: 241 GKAYRDGLAARKQLMAEINSQEQQMANNGAPLPNGMSMDTARLGRLMRHDPRIRLAFLAA 300
            KAYRDG+AAR++LMAEINSQEQQMANNGAPLPNG+SMDTARLGRLMRHDPRIRLAFLA 
Sbjct: 235 AKAYRDGIAARRELMAEINSQEQQMANNGAPLPNGLSMDTARLGRLMRHDPRIRLAFLAV 294

Query: 301 GGWDTHIGQGNGTGQLAARLSPLGAGLATLARELGPAFNDTVIVVMSEFGRTFRENGNGG 360
           GGWDTHI QGNGTGQLA RLSPLGAGLATLA ELGPAFNDTVIVVMSEFGRTFRENGNGG
Sbjct: 295 GGWDTHINQGNGTGQLAGRLSPLGAGLATLAHELGPAFNDTVIVVMSEFGRTFRENGNGG 354

Query: 361 TDHGHGNAMWLMGGNLRGGKIYGQWPGLNQAALNEGRDLAITTDFRAVLCALAEQHMRIP 420
           TDHGHGNAMWLMGGNLRGGKIYGQWPGLNQAALNEGRDLAITTDFRAVLCAL+E+HMRIP
Sbjct: 355 TDHGHGNAMWLMGGNLRGGKIYGQWPGLNQAALNEGRDLAITTDFRAVLCALSERHMRIP 414

Query: 421 DQALEKIFPQYASGTKGMSTFFI 443
           D+ALEKIFPQYA+G+KG+   F+
Sbjct: 415 DRALEKIFPQYAAGSKGVPALFV 437


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.136    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,504,060
Number of extensions: 68062
Number of successful extensions: 266
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 265
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 355
Effective length of database: 1,203,190
Effective search space: 427132450
Effective search space used: 427132450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)