BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3101.p
         (516 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312432|ref|YP_003776524.1| hypothetical protein Hsero_3132...   857   0.0  

>gi|300312432|ref|YP_003776524.1| hypothetical protein Hsero_3132
           [Herbaspirillum seropedicae SmR1]
          Length = 574

 Score =  857 bits (2215), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/474 (87%), Positives = 440/474 (92%)

Query: 43  LSEQERALHVLNRLGYGPRPGDLEQVEHMGVKRYIDQQLHPERIPLPAELQASLAALPGL 102
           LSEQERALHVLNRL YGPRPGDLE+VE MGVKRYIDQQLHPERIPLPA+LQASLAALPGL
Sbjct: 101 LSEQERALHVLNRLAYGPRPGDLEEVERMGVKRYIDQQLHPERIPLPAQLQASLAALPGL 160

Query: 103 QMTTSQLFVDYGPPSFERNISKEEQAVARQRAVRELTPQWHMARLLQATESPRQLEEVMT 162
           QMT +QLFVDYGPPSF++  SKEE+  ARQRA RELTPQ+HMARLLQATESPRQLEEVMT
Sbjct: 161 QMTPAQLFVDYGPPSFDKEGSKEEKQAARQRAPRELTPQFHMARLLQATESPRQLEEVMT 220

Query: 163 EFWANHFNVFEGKDWVRYWVGDYEKNAIRPYALGNFRELLGAVAHHPAMLYYLDNWLSSG 222
           EFWANHFNVFEGK+WVRYWVGDYEKNAIRPYALGNFR+LLGAVAHHPAMLYYLDNWLSSG
Sbjct: 221 EFWANHFNVFEGKEWVRYWVGDYEKNAIRPYALGNFRDLLGAVAHHPAMLYYLDNWLSSG 280

Query: 223 AGTPGARGRFKGLNENYARELMELHTLGVNGGYQQADVITLARILSGWTIDVDAMKAGAA 282
           AGT GARGRFKGLNENYARELMELHTLGV+GGYQQADVITLARILSGWTIDV+AMKAGAA
Sbjct: 281 AGTRGARGRFKGLNENYARELMELHTLGVDGGYQQADVITLARILSGWTIDVNAMKAGAA 340

Query: 283 PFRFIAQRHDNGPKIFLGKPLAASGYQEGEAALDILANHPSTARFIATQLVQYFVSDQAD 342
           PF F AQRHD  PK+FLGKPLAA+GYQEGEAALDILANHP+TARFI+TQLVQYFVSDQ D
Sbjct: 341 PFSFAAQRHDPSPKVFLGKPLAATGYQEGEAALDILANHPATARFISTQLVQYFVSDQPD 400

Query: 343 PALVHKLSQKFLSTHGDIRAVLQTLFDSPQFWARSNYQTQFKTPYQFVVSALRAGDIPVR 402
           PALV KLSQ FLSTHGD+RAVL+TLFDSPQFWARSNYQTQFKTPYQFVVSALRA DIPVR
Sbjct: 401 PALVQKLSQTFLSTHGDLRAVLKTLFDSPQFWARSNYQTQFKTPYQFVVSALRASDIPVR 460

Query: 403 NAKAVNGELSQFGMPLYGWLTPEGYKYSQAAWLNPDALLRRINFAGYLASGWSPIARPEG 462
           NAK VNG L+QFGMPLYGWLTPEGYKYSQAAWLNPDALLRRINFAG L +G SPIARPEG
Sbjct: 461 NAKPVNGALAQFGMPLYGWLTPEGYKYSQAAWLNPDALLRRINFAGNLVNGKSPIARPEG 520

Query: 463 TPPPSKAELRPLDAQLLRTTLGPAITSQTAARIEAAPENQRASLILGSPDFMKR 516
             PPS A+ RP+DAQ L  TLGPA+  QTAA+I AAPEN +A LILGSPDFMKR
Sbjct: 521 EAPPSNADARPVDAQQLLRTLGPAVAPQTAAKILAAPENVQAGLILGSPDFMKR 574


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,631,747
Number of extensions: 72892
Number of successful extensions: 220
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 220
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 427
Effective length of database: 1,198,455
Effective search space: 511740285
Effective search space used: 511740285
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)