BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3093.p
         (277 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312891|ref|YP_003776983.1| Zn-dependent beta-lactamase dom...   446   e-126
gi|300309908|ref|YP_003774000.1| Zn-dependent hydrolase [Herbasp...   161   7e-41

>gi|300312891|ref|YP_003776983.1| Zn-dependent beta-lactamase domain
           hydrolase [Herbaspirillum seropedicae SmR1]
          Length = 276

 Score =  446 bits (1147), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 213/276 (77%), Positives = 242/276 (87%)

Query: 1   MNFPSQQIGDFSVTAISDGFLRAPLDVLSNIDPAEAARLQQDAGMTDPSAIHINCYLIRS 60
           M+FP++QIGDFSVTAISDGFL APL++LSNIDPAEA RLQ  AGM+DPSAIHINCYLIRS
Sbjct: 1   MHFPTKQIGDFSVTAISDGFLSAPLELLSNIDPAEATRLQHAAGMSDPSAIHINCYLIRS 60

Query: 61  QSKTILVDTGAGGFKQWGGRLQDNLRRAGVLPTDIDTILLTHAHPDHIGGLLDSTGELGF 120
            ++T+LVD GAGGFKQWGGRLQDNL+RAGVLP+DIDT+LLTHAHPDHIGGLLDS G+  F
Sbjct: 61  PTQTVLVDAGAGGFKQWGGRLQDNLKRAGVLPSDIDTVLLTHAHPDHIGGLLDSAGDRAF 120

Query: 121 PDAELVLHEQELSFWQNDIHLHRANERARGNFLFARQVFEKYRDRIRLFAGEEVLPGISA 180
           PDAELV+  QEL FW+ND +  RA+ERARGNF+FAR+VF KYRDR+R FAG EVLPGISA
Sbjct: 121 PDAELVVQGQELDFWENDANFCRASERARGNFIFARRVFVKYRDRLRTFAGGEVLPGISA 180

Query: 181 LSLPGHTAGHCGYRVQSNDQDLLIWGDIVHFPHLQISHPEVSIAFDLDARLAAATRTRLL 240
             LPGHT GHCGY + SN Q LLIWGDIVHFPHLQI+ P+VSIAFDLD  LA ATR  LL
Sbjct: 181 QLLPGHTDGHCGYHINSNGQGLLIWGDIVHFPHLQIARPDVSIAFDLDPHLATATRVHLL 240

Query: 241 DIVSADQLLIAGMHLGEEGFVRIIRNGKHYRLVSQQ 276
           D+VSADQLLIAGMHLGEEGFV+I+R GK YR+V ++
Sbjct: 241 DMVSADQLLIAGMHLGEEGFVQIVRTGKSYRVVGKR 276


>gi|300309908|ref|YP_003774000.1| Zn-dependent hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 331

 Score =  161 bits (407), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 98/268 (36%), Positives = 140/268 (52%), Gaps = 6/268 (2%)

Query: 8   IGDFSVTAISDGFLRAPLD-VLSNIDPAEAARLQQDAGMTDPSAIHINCYLIRSQSKTIL 66
           +GDF VT ++DG    P D ++  +D        +DAG        IN +LI +  + IL
Sbjct: 49  VGDFKVTVLTDGTTPVPFDQIMHGMDKHALTAQFRDAGEPVNRETSINAFLIDTGERRIL 108

Query: 67  VDTGAGG-FKQWGGRLQDNLRRAGVLPTDIDTILLTHAHPDHIGGLLDSTGELGFPDAEL 125
           +D+GAG  F    G L + L+ AG  P  ID +LLTH H DH  GL    GE  FP+A++
Sbjct: 109 IDSGAGKVFGSCCGHLVETLKIAGYDPASIDAVLLTHVHGDHSAGLARD-GERQFPNADV 167

Query: 126 VLHEQELSFWQNDIHLHRANERARGNFLFARQVFEKY--RDRIRLFAGEEVL-PGISALS 182
            L + EL +W +D    +A    +  F+  R     Y    RIR F+G   L PGI A+ 
Sbjct: 168 FLAKSELDYWMSDSAKAQAKASHQQMFVEGRAALAPYLAAGRIRTFSGRTTLFPGIEAIP 227

Query: 183 LPGHTAGHCGYRVQSNDQDLLIWGDIVHFPHLQISHPEVSIAFDLDARLAAATRTRLLDI 242
            PGHT GH  Y ++S  + + + GDI+H   +Q+ HP V++ FD D   AA TR   L+ 
Sbjct: 228 APGHTPGHSFYDIESRGRRMRVVGDIIHAAEVQLPHPNVTVDFDADEAQAARTRIAALEA 287

Query: 243 VSADQLLIAGMHLGEEGFVRIIRNGKHY 270
           ++    L+AG HL   G   I+R G  +
Sbjct: 288 LAQSHELVAGPHLSFPGLGHILRAGDGF 315


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.140    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 882,268
Number of extensions: 37145
Number of successful extensions: 108
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 2
Length of query: 277
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 193
Effective length of database: 1,222,130
Effective search space: 235871090
Effective search space used: 235871090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)