BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3087.p (555 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312424|ref|YP_003776516.1| methyl-accepting chemotaxis sen... 820 0.0 gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis tra... 365 e-102 gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis pro... 363 e-101 gi|300310789|ref|YP_003774881.1| methyl-accepting chemotaxis tra... 351 8e-98 gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis pro... 342 4e-95 >gi|300312424|ref|YP_003776516.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 531 Score = 820 bits (2119), Expect = 0.0, Method: Compositional matrix adjust. Identities = 451/536 (84%), Positives = 487/536 (90%), Gaps = 5/536 (0%) Query: 20 MLGFSILILFMAALGGNALYLMGNINRQLNDVQTNWMPSVTTAQTMLAEMRAVNLAQYRA 79 MLGFSILILFMAALGG +LY+MG IN QL DVQ NWMPSVTTAQTMLAEMRAVNLAQYRA Sbjct: 1 MLGFSILILFMAALGGTSLYIMGKINAQLVDVQGNWMPSVTTAQTMLAEMRAVNLAQYRA 60 Query: 80 LTANNAQRMQDAKTRIAAALGRYSKAAEQYRHLISTPEEQKAFDELQDLLTRYQQIGDQL 139 LTA+NAQRMQDA+TRI AALGRY+KA+EQYRHLIS+P EQ A+DELQ LL RY QIGDQL Sbjct: 61 LTADNAQRMQDARTRITAALGRYTKASEQYRHLISSPAEQSAYDELQALLARYIQIGDQL 120 Query: 140 LQTVEQGNEIEAANIMKDTLYPVRTAMEAKIQQIIRINQQGAAQAAEQGQASYTRSHGII 199 Q+VEQG E EAAN MKDTLYPVRTAMEAKIQQII+INQ+GAAQA E GQASY +SH I Sbjct: 121 PQSVEQGKEEEAANTMKDTLYPVRTAMEAKIQQIIKINQEGAAQAVEHGQASYAQSHLTI 180 Query: 200 IAFTVAATVAGLAIALLISRRLTRQLGGEPGQAMWLSGQIAAGNLAARLELKSHDTSSLM 259 IAFT+AA +AGL IALLISRRLTRQLGGEPG+AMWLSGQIAAGNLAARLELKS+D SLM Sbjct: 181 IAFTLAAALAGLGIALLISRRLTRQLGGEPGEAMWLSGQIAAGNLAARLELKSNDNGSLM 240 Query: 260 RSLMIMRDQLSGLVGQIKHASSSIHVAAHEIAQGNIDLSQRTEEQAASLEETASSMEQLT 319 RSLMIMRDQLSGLVGQI+HAS+SIHVAA EIAQGNIDLSQRTEEQAASLEETASSME+LT Sbjct: 241 RSLMIMRDQLSGLVGQIQHASTSIHVAAQEIAQGNIDLSQRTEEQAASLEETASSMEELT 300 Query: 320 STVQQNANNARQASGMASAGAEVAHRGEAEIAQVVTTMREMSVSSHQMSDIISVIEGISF 379 STVQQNA NA+QAS MASAGAEVA RGEAEIA VV TMREMSVSSHQMSDIISVIEGISF Sbjct: 301 STVQQNAGNAKQASSMASAGAEVARRGEAEIADVVATMREMSVSSHQMSDIISVIEGISF 360 Query: 380 QTNILALNAAVEAARAGENGRGFAVVATEVRALAQRSAAAAKEIKDLIENSVNRIQSGTR 439 QTNILALNAAVEAARAGENGRGFAVVA+EVRALAQRS+AAAKEIKDLIE+SV RI++G++ Sbjct: 361 QTNILALNAAVEAARAGENGRGFAVVASEVRALAQRSSAAAKEIKDLIEDSVGRIRNGSQ 420 Query: 440 LVEAAGDTIAEILQSSSRTTTLMKEIAAASEEQSAGIGQVNTAIVQMDQVTQQNAALVEQ 499 LVEAAG TIAEI+QSS RTT LMKEIAAASEEQSAGIGQVNTAIVQMDQVTQQNAALVE+ Sbjct: 421 LVEAAGATIAEIMQSSVRTTDLMKEIAAASEEQSAGIGQVNTAIVQMDQVTQQNAALVEE 480 Query: 500 AAAAAQAMMQQAQALTEAVSMFTLEDAALATLPGVAASGLPAPARQVRGMARPALN 555 AAAAAQ+MMQQAQALT AVS+F L+D AL TLP G+PA + R +A PAL+ Sbjct: 481 AAAAAQSMMQQAQALTAAVSVFKLDDQALRTLP-----GMPAAPQLGRSLATPALS 531 >gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 579 Score = 365 bits (938), Expect = e-102, Method: Compositional matrix adjust. Identities = 230/519 (44%), Positives = 350/519 (67%), Gaps = 11/519 (2%) Query: 10 FRNTKVATQLMLGFSILILFMAALGGNALYLMGNINRQLNDVQTNWMPSVTTAQTMLAEM 69 F + +++ +L+ F +++ +AALG ++ + +N ++ TNW+PS+ T + M Sbjct: 4 FYDLRISRKLITTFLVVVAMVAALGVFSIRQLDQVNSASTEISTNWLPSIRTLARLQLAM 63 Query: 70 RAVNLAQYRALTANNAQRMQDAKTRIAAALGRYSKAAEQYRHLISTPEEQKAFDELQDLL 129 + + + + A +A+ ++ + + + A +Y IS PEE+ + E++ L+ Sbjct: 64 SRLRSFELQHILAKDAKEYEEVERGMQVQMNNLKTAQAEYVTQISEPEEKAIYPEVEKLI 123 Query: 130 TRYQQIGDQLLQTVEQGNEIEAANIMK-DTLYPVRTAMEAKIQQIIRINQQGAAQAAEQG 188 + D+++ QG + EA N+ + ++ RT+++ +I ++ +N +GA + +Q Sbjct: 124 ATFVSEHDKIIALSRQGKDEEARNLQRGESTKAYRTSLQ-QIDKLAAVNDKGADISNKQA 182 Query: 189 QASYTRSHGIIIAFTVAATVAGLA--IALLISRRLTRQLGGEPGQAMWLSGQIAAGNLAA 246 A Y ++ II TVAA + GLA +A+ +SR + R L +A+ ++ ++A G+L Sbjct: 183 DAIYAQARLWII-VTVAACI-GLAMLLAVWVSRLIARPLE----EAVSVAQRVAGGDLTT 236 Query: 247 RLELKSHD-TSSLMRSLMIMRDQLSGLVGQIKHASSSIHVAAHEIAQGNIDLSQRTEEQA 305 R+E D T L+ +L M D L G+VGQ++ + +I A+ EIA GN+DLS RTEEQA Sbjct: 237 RIEPAGKDETGQLLVALKSMNDSLVGIVGQVRMGTQTITTASTEIASGNLDLSSRTEEQA 296 Query: 306 ASLEETASSMEQLTSTVQQNANNARQASGMASAGAEVAHRGEAEIAQVVTTMREMSVSSH 365 +SLEETAS+ME+LTSTV+QNA+NARQA+ +A + +EVA +G A + QVV TM ++ SS Sbjct: 297 SSLEETASAMEELTSTVKQNADNARQANQLAVSASEVASQGGAVVNQVVDTMGSINASSR 356 Query: 366 QMSDIISVIEGISFQTNILALNAAVEAARAGENGRGFAVVATEVRALAQRSAAAAKEIKD 425 +++DII VI+GI+FQTNILALNAAVEAARAGE GRGFAVVA+EVR+LAQRSA AAKEIK+ Sbjct: 357 KIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKE 416 Query: 426 LIENSVNRIQSGTRLVEAAGDTIAEILQSSSRTTTLMKEIAAASEEQSAGIGQVNTAIVQ 485 LIE SV ++ G++LVE AG T++E++QS R T ++ EI++AS+EQS GI QVN AI Q Sbjct: 417 LIEGSVAQVDMGSKLVERAGITMSEVVQSVRRVTDIVGEISSASQEQSEGIEQVNLAIAQ 476 Query: 486 MDQVTQQNAALVEQAAAAAQAMMQQAQALTEAVSMFTLE 524 MD+VTQQNAALVE+AAAAAQ++ +QA+ LT+ V F LE Sbjct: 477 MDEVTQQNAALVEEAAAAAQSLQEQAETLTQTVGFFKLE 515 >gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 516 Score = 363 bits (931), Expect = e-101, Method: Compositional matrix adjust. Identities = 224/517 (43%), Positives = 345/517 (66%), Gaps = 7/517 (1%) Query: 10 FRNTKVATQLMLGFSILILFMAALGGNALYLMGNINRQLNDVQTNWMPSVTTAQTMLAEM 69 F N K+A +L++ F+ +I+ LG A+ + +N+ D+ TNW+P++ AQ++ A + Sbjct: 4 FNNLKIAKKLIVSFAAVIVLTVILGLFAIRELKAVNQASTDMATNWLPTIKAAQSIQASL 63 Query: 70 RAVNLAQYRALTANNAQRMQDAKTRIAAALGRYSKAAEQYRHLISTPEEQKAFDELQDLL 129 + +++ + +TA +DA I + L +K Y IS EE+ +++ Sbjct: 64 PRMRISELQMVTAATPAEREDALKAIKSRLDILAKQRAAYEAQISEAEEKVLYEKFSKSF 123 Query: 130 TRYQQIGDQLLQTVEQGNEIEAANIMK-DTLYPVRTAMEAKIQQIIRINQQGAAQAAEQG 188 Y +I +L + +G E EA + K D+ R+ +E + +II++N G+ ++ + Sbjct: 124 ATYLEIDKELARISAEGKEEEARALFKGDSNKTFRSMIE-NMDEIIKVNDAGSKRSDDMA 182 Query: 189 QASYTRSHGIIIAFTVAATVAGLAIALLISRRLTRQLGGEPGQAMWLSGQIAAGNLAARL 248 + Y + II A V L +A++++R ++R L +A+ ++ ++A G+L + Sbjct: 183 EQVYRSATLWIIGLLAAIVVIALGLAVMVARAVSRPLN----EAVAVAERVAQGDLTMDI 238 Query: 249 ELKSHD-TSSLMRSLMIMRDQLSGLVGQIKHASSSIHVAAHEIAQGNIDLSQRTEEQAAS 307 S D T LM SL M D L +VG+++ + +I A+ EIA GN+DLS RTEEQA S Sbjct: 239 RATSTDETGMLMHSLRAMNDSLQQIVGEVRTGTDTITTASQEIATGNLDLSSRTEEQAGS 298 Query: 308 LEETASSMEQLTSTVQQNANNARQASGMASAGAEVAHRGEAEIAQVVTTMREMSVSSHQM 367 LEETAS+ME+LT+TV+QNA+NARQA+ +A++ +++A +G A + QVV TM ++ SS+++ Sbjct: 299 LEETASAMEELTATVKQNADNARQANQLAASASDIATQGGAVVGQVVQTMEGITESSNRI 358 Query: 368 SDIISVIEGISFQTNILALNAAVEAARAGENGRGFAVVATEVRALAQRSAAAAKEIKDLI 427 +DIISVI+GI+FQTNILALNAAVEAARAGE GRGFAVVA+EVR+LAQRSA+AAKEIK LI Sbjct: 359 ADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLI 418 Query: 428 ENSVNRIQSGTRLVEAAGDTIAEILQSSSRTTTLMKEIAAASEEQSAGIGQVNTAIVQMD 487 ++SV ++ +G++LVE AG T++E++ S R T ++ EI+AAS EQS GI ++N AI QMD Sbjct: 419 DDSVEKVGAGSQLVERAGATMSEVVASVRRVTDVVAEISAASNEQSTGIEEINRAITQMD 478 Query: 488 QVTQQNAALVEQAAAAAQAMMQQAQALTEAVSMFTLE 524 +VTQQNAALVE+AAAAAQ++ QA L++ VS+F L+ Sbjct: 479 EVTQQNAALVEEAAAAAQSLQDQAARLSQVVSVFKLQ 515 >gi|300310789|ref|YP_003774881.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 351 bits (901), Expect = 8e-98, Method: Compositional matrix adjust. Identities = 223/521 (42%), Positives = 322/521 (61%), Gaps = 17/521 (3%) Query: 14 KVATQLMLGFSILILFMAALGGNALYLMGNINRQLNDVQTNWMPSVTTAQTMLAEMRAVN 73 KV+T+L LGF+ +++ + + L+ M + L+D+ N Q LA++ N Sbjct: 5 KVSTRLALGFASVVVLLVVISLVGLWGMATVKGNLSDIVAN------NQQGGLADVMN-N 57 Query: 74 LAQYRALTANNAQRMQDAK------TRIAAALGRYSKAAEQYRHLISTPEEQKAFDELQD 127 + RAL N Q+ RI Y A E+ + P+ + EL D Sbjct: 58 SVRIRALAIRNIALFQEPALIAREIERIKVQEKAYQDAREKLGKMFDQPDTTRREHELFD 117 Query: 128 LLTR----YQQIGDQLLQTVEQGNEIEAANIMKDTLYPVRTAMEAKIQQIIRINQQGAAQ 183 L+ + + + +Q + +Q E +++ + PV+ + ++ R + Q Sbjct: 118 LIAQNAADTEPLMNQAVTLAQQDKSAELISLLTQKIRPVQAKWLDNLDELGRFEDELNNQ 177 Query: 184 AAEQGQASYTRSHGIIIAFTVAATVAGLAIALLISRRLTRQLGGEPGQAMWLSGQIAAGN 243 A+ +Y + + +A A LI R + QLGGEP QA L+ QIA GN Sbjct: 178 ASAAADTTYRSILTTTWTLVAGSVLLAVAAAFLIVRSVLHQLGGEPAQAQELAAQIAQGN 237 Query: 244 LAARLELKSHDTSSLMRSLMIMRDQLSGLVGQIKHASSSIHVAAHEIAQGNIDLSQRTEE 303 LA + L D SLM SL MR QL+ +V IKH++ SI AA +IA GN+DLS+RTEE Sbjct: 238 LAVSIPLAKGDQHSLMASLENMRAQLTRIVDGIKHSAESISTAASQIAVGNLDLSRRTEE 297 Query: 304 QAASLEETASSMEQLTSTVQQNANNARQASGMASAGAEVAHRGEAEIAQVVTTMREMSVS 363 QAASLEETASSME++TSTV+QN NA Q +A + + A +G + +VV TM+++S S Sbjct: 298 QAASLEETASSMEEITSTVEQNTQNAGQGHQLARSASLHAQKGGEVVERVVGTMKDISQS 357 Query: 364 SHQMSDIISVIEGISFQTNILALNAAVEAARAGENGRGFAVVATEVRALAQRSAAAAKEI 423 ++++++II+ +EGI+FQTNILALNAAVEAARAGE GRGFAVVATEVR+LAQRSA++AKEI Sbjct: 358 AYKITEIIATVEGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASSAKEI 417 Query: 424 KDLIENSVNRIQSGTRLVEAAGDTIAEILQSSSRTTTLMKEIAAASEEQSAGIGQVNTAI 483 + LIE+SV +++G +LV+ AG T+ E+++S + LM EI AAS EQS+GI Q+N AI Sbjct: 418 RGLIESSVQHVEAGQKLVDEAGLTMDEVVRSIQQVNDLMSEITAASNEQSSGISQINIAI 477 Query: 484 VQMDQVTQQNAALVEQAAAAAQAMMQQAQALTEAVSMFTLE 524 QMD+VTQQNAALVE++A+AAQ+M QQA +L +AV++F +E Sbjct: 478 SQMDEVTQQNAALVEESASAAQSMAQQANSLRDAVAVFRIE 518 >gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 563 Score = 342 bits (878), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 218/521 (41%), Positives = 345/521 (66%), Gaps = 11/521 (2%) Query: 14 KVATQLMLGFSILILFMAALGGNALYLMGNINRQLNDVQTNWMPSVTTAQTMLAEM--RA 71 K+ T+L LGF+ ++L + + G ++ M + + V P + ML + R+ Sbjct: 6 KMGTRLGLGFAWVVLLLVLVTGFGIFNMHQVQGRFTHVVEVKNPESALVKEMLETVGERS 65 Query: 72 VNLAQYRALTANNAQRMQDAKTR-IAAALGRYSKAAEQYRHLI-----STPEEQKAFDEL 125 ++L R L A D + + I A +Y AA++ + L ++ EE+ A ++ Sbjct: 66 ISL---RNLMLPAAPEDVDIEAQYIEAQSLKYKMAAQKLQQLFAESSDTSDEEKAALPKI 122 Query: 126 QDLLTRYQQIGDQLLQTVEQGNEIEAANIMKDTLYPVRTAMEAKIQQIIRINQQGAAQAA 185 ++ +++ ++ ++ ++ E A +K+ PV+ + + +++ + + Q +AA Sbjct: 123 AAQASKAEKLINEAVEFGKRREAYELAQFLKEQYLPVQKSWQVELKALAALEDQLNKEAA 182 Query: 186 EQGQASYTRSHGIIIAFTVAATVAGLAIALLISRRLTRQLGGEPGQAMWLSGQIAAGNLA 245 E +Y+R+ +++ + V + A ++R L R+LGGEP A+ ++GQIA G+LA Sbjct: 183 EASAVAYSRARMLMLLISAIGVVTAVLAAFWLTRHLLRKLGGEPDYAVQIAGQIAEGDLA 242 Query: 246 ARLELKSHDTSSLMRSLMIMRDQLSGLVGQIKHASSSIHVAAHEIAQGNIDLSQRTEEQA 305 ++ ++ D SLM ++ +MRD+L+ +V +++ S +I A+ EIA+GN+DLS RTE+QA Sbjct: 243 VVIDTRAGDHDSLMAAMRVMRDKLAAIVAEVRKGSETITTASSEIARGNLDLSGRTEQQA 302 Query: 306 ASLEETASSMEQLTSTVQQNANNARQASGMASAGAEVAHRGEAEIAQVVTTMREMSVSSH 365 +LEETASSMEQL STV+QNA NA QA+ +A A ++VA +G + ++QVV TM+ ++ SS Sbjct: 303 GALEETASSMEQLNSTVKQNAENAHQANDLALAASDVAVQGGSIVSQVVQTMQSINASSQ 362 Query: 366 QMSDIISVIEGISFQTNILALNAAVEAARAGENGRGFAVVATEVRALAQRSAAAAKEIKD 425 +++DI+SVI+GI+FQTNILALNAAVEAARAGE GRGFAVVA+EVR+LAQRSA+AAKEIK Sbjct: 363 KVADIVSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKV 422 Query: 426 LIENSVNRIQSGTRLVEAAGDTIAEILQSSSRTTTLMKEIAAASEEQSAGIGQVNTAIVQ 485 LI +SV ++++G++LVE AG T+ +I+ S R T +M EI A+ EQS+GI QVN AI+Q Sbjct: 423 LIGDSVGKVENGSKLVEQAGSTMHDIVTSIRRVTDVMTEINHANREQSSGIEQVNEAIIQ 482 Query: 486 MDQVTQQNAALVEQAAAAAQAMMQQAQALTEAVSMFTLEDA 526 +D +TQQNAALVEQAAAAA+++ +QA L + VS+F L+ A Sbjct: 483 IDDMTQQNAALVEQAAAAARSLQEQAAGLQQLVSVFRLDAA 523 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.124 0.322 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,243,376 Number of extensions: 40268 Number of successful extensions: 634 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 353 Number of HSP's successfully gapped: 71 Length of query: 555 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 465 Effective length of database: 1,193,720 Effective search space: 555079800 Effective search space used: 555079800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)