BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3080.p
         (167 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312416|ref|YP_003776508.1| phosphinothricin N-acetyltransf...   297   3e-82
gi|300313844|ref|YP_003777936.1| sortase/acetyltransferase [Herb...   117   7e-28

>gi|300312416|ref|YP_003776508.1| phosphinothricin
           N-acetyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 167

 Score =  297 bits (761), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 141/165 (85%), Positives = 152/165 (92%)

Query: 1   MQPSIRPATAADAAALCGIYNHYVQTTVISFETEAVSVEAMAARIAEVQAQFPWLVFEEN 60
           MQPSIRPATAADA ALCGIYNHYV TT ISFETE VS E+M ARIAEVQA+FPWLV+EE 
Sbjct: 1   MQPSIRPATAADAPALCGIYNHYVATTAISFETEPVSEESMVARIAEVQAKFPWLVYEEE 60

Query: 61  GEVLGYAYASKWKPRAAYQHSVESSVYLRHDAGGRGIGKQLYRALIARLKPLGVHLVIGG 120
           G+VLGYAYA++WKPRAAY+ SVESSVYLRHDAGGRGIGK+LYR L A LKPLG+HLVIGG
Sbjct: 61  GQVLGYAYATQWKPRAAYRQSVESSVYLRHDAGGRGIGKRLYRQLFAELKPLGIHLVIGG 120

Query: 121 IAQPNPASVALHESVGFVKCGVFTEVGYKMGRWIDVGYWQLKLQE 165
           IAQPN ASVALHES+GFVKCGVF EVGYKMGRWID+GYWQLKLQE
Sbjct: 121 IAQPNAASVALHESLGFVKCGVFNEVGYKMGRWIDMGYWQLKLQE 165


>gi|300313844|ref|YP_003777936.1| sortase/acetyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 173

 Score =  117 bits (292), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 65/161 (40%), Positives = 89/161 (55%), Gaps = 1/161 (0%)

Query: 5   IRPATAADAAALCGIYNHYV-QTTVISFETEAVSVEAMAARIAEVQAQFPWLVFEENGEV 63
           IR A  AD A +  IYN  V  TT I  ET            A  Q+ +P LV   +G+V
Sbjct: 3   IRDAELADIAGITPIYNDAVANTTAIWNETLVDDRNREDWLTARRQSGYPVLVAVADGKV 62

Query: 64  LGYAYASKWKPRAAYQHSVESSVYLRHDAGGRGIGKQLYRALIARLKPLGVHLVIGGIAQ 123
           LGYA    W+    Y+H+VE SVY+  D  G G+G+ L  ALIAR + LG H+++ GI  
Sbjct: 63  LGYASFGDWRAFDGYRHTVEHSVYVHKDHRGEGLGRALMEALIARARALGKHVMVAGIDA 122

Query: 124 PNPASVALHESVGFVKCGVFTEVGYKMGRWIDVGYWQLKLQ 164
            N  S+ LH+ +GF + G   +VG K G+W+D+ + QL L 
Sbjct: 123 SNSGSINLHKKLGFEQVGYLPQVGTKFGKWLDLAFLQLMLD 163


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 553,508
Number of extensions: 22281
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 2
Length of query: 167
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 88
Effective length of database: 1,245,805
Effective search space: 109630840
Effective search space used: 109630840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)