BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3075.p (368 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312411|ref|YP_003776503.1| NADH:flavin oxidoreductase/NADH... 652 0.0 gi|300313850|ref|YP_003777942.1| xenobiotic reductase A [Herbasp... 117 1e-27 gi|300312734|ref|YP_003776826.1| NADH:flavin oxidoreductase [Her... 115 6e-27 >gi|300312411|ref|YP_003776503.1| NADH:flavin oxidoreductase/NADH oxidase family protein [Herbaspirillum seropedicae SmR1] Length = 366 Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust. Identities = 317/357 (88%), Positives = 336/357 (94%) Query: 10 SDLFQPVQLGAVQLQNRIVMAPLTRSRALAGDVPTDLAAEYYAQRAGAGLIIAEATQISP 69 SDLF+PVQLGAVQLQNRIVMAPLTRSRA AGDVP+DLAAEYYAQRAGAGLIIAEATQISP Sbjct: 8 SDLFKPVQLGAVQLQNRIVMAPLTRSRAQAGDVPSDLAAEYYAQRAGAGLIIAEATQISP 67 Query: 70 QGKGYAWTPGIYNQAQVAGWKKITDAVHAKGGRIFLQLWHVGRISHPDLQPGHALPVAPS 129 +GKGYAWTPGIYN A VA WKKITDAVHAKGGRIFLQLWHVGRISHPDLQPGHALPVAPS Sbjct: 68 EGKGYAWTPGIYNDAHVAAWKKITDAVHAKGGRIFLQLWHVGRISHPDLQPGHALPVAPS 127 Query: 130 AIRPEGNAFTESGFKPFVEPRALEIAELPGIVEQYKTAAQLSMQAGFDGVEIHAANGYLL 189 A++PEG AFTESGFKPFV PRALE AELP IVEQYK AAQLSMQAGFDGVEIHAANGYLL Sbjct: 128 AVQPEGQAFTESGFKPFVTPRALEAAELPAIVEQYKKAAQLSMQAGFDGVEIHAANGYLL 187 Query: 190 DQFLRDKSNQRTDAYGGSIENRARLLLEVVEAVTSVIPSERVGIRLSPISPANDIADSNP 249 DQFLRDK+NQRTD YGGSIENRARLLLEVV+AVTSV+PSERVGIRLSPISPANDIADS+P Sbjct: 188 DQFLRDKTNQRTDGYGGSIENRARLLLEVVQAVTSVVPSERVGIRLSPISPANDIADSDP 247 Query: 250 EALFRYVVQQLNRYQLVYLHVVEGATGGPREVEGGFDLQVLRELFQGLYIANNGYDLEMA 309 +ALF YVV+QLNR++LVYLHVVEGATGGPREV GGFDLQVLR+LF+GLYIANNGYDL+MA Sbjct: 248 KALFSYVVEQLNRFKLVYLHVVEGATGGPREVPGGFDLQVLRDLFKGLYIANNGYDLDMA 307 Query: 310 VQARARNLADLVAFGRLWIANPDLVQRFKAGAALAQINQATLYGGGAEGYTDYPPLQ 366 +QARA N ADLVAFGR WIANPDLVQRF GA LA NQATLYGGGA GYTDYPP++ Sbjct: 308 LQARASNRADLVAFGRPWIANPDLVQRFLHGAELATFNQATLYGGGAAGYTDYPPMK 364 >gi|300313850|ref|YP_003777942.1| xenobiotic reductase A [Herbaspirillum seropedicae SmR1] Length = 362 Score = 117 bits (293), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 82/233 (35%), Positives = 121/233 (51%), Gaps = 26/233 (11%) Query: 10 SDLFQPVQLGAVQLQNRIVMAPLTRSRALAGDVPTDLAAEYYAQ--RAGAGLIIAEATQI 67 S LFQP +L V L+NRI + P+ + A+ G V D +YA R GAGL+I EAT + Sbjct: 2 SALFQPFKLKDVSLRNRIAVPPMCQYMAVEGKV-NDWHLSHYASIARGGAGLVIVEATAV 60 Query: 68 SPQGKGYAWTPGIYNQAQVAGWKKITDAVHAKGGRIFLQLWHVGR-------------IS 114 SP+G+ GI++ A + + A+ A G +Q+ H GR I+ Sbjct: 61 SPEGRITPGCTGIWSDALGQAFVPVVQAIKAAGAVPGIQIGHAGRKASANRPWEGDDHIA 120 Query: 115 HPDLQPGHALPVAPSAIRPEGNAFTESGFKPFVEPRALEIAELPGIVEQYKTAAQLSMQA 174 D + L +PSAI G + P+A+ + ++ + + + AA + +A Sbjct: 121 ADDARGWDTL--SPSAI-AYGRGLPKV-------PKAMSLDDIARVRQDFVNAAVRAREA 170 Query: 175 GFDGVEIHAANGYLLDQFLRDKSNQRTDAYGGSIENRARLLLEVVEAVTSVIP 227 GF+ +E+H A+GYL F +NQR D YGGS+ENRAR LLE + AV V P Sbjct: 171 GFEWLELHFAHGYLGQSFFSAHANQRDDLYGGSVENRARFLLETLRAVREVWP 223 >gi|300312734|ref|YP_003776826.1| NADH:flavin oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 372 Score = 115 bits (288), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 98/278 (35%), Positives = 147/278 (52%), Gaps = 18/278 (6%) Query: 8 LASDLFQPVQLGAVQLQNRIVMAPLTRSRALAGDVPTDLAAEYYAQRA--GAGLIIAEAT 65 ++S LF P+ L V L NRI ++P+ + A G V D + RA GAGL++ EAT Sbjct: 1 MSSHLFSPLPLRGVTLPNRIAVSPMCQYSAEDGFV-NDWHLVHLGSRAVGGAGLVLMEAT 59 Query: 66 QISPQGKGYAWTPGIYNQAQVAGWKKITDAVHAKGGRIFLQLWHVGRISHPDLQP--GHA 123 + +G+ + GI+ +A ++IT + +G +QL H GR S L+P G A Sbjct: 60 AVVAEGRISSADLGIWKDEHIAPLRRITRFIEQQGAVPGIQLAHAGRKSS-ILRPWDGPA 118 Query: 124 LPVAPSAIRPEGNAFTESGFKP-FVEPRALEIAELPGIVEQYKTAAQLSMQAGFDGVEIH 182 V PSA A + F + P+A+ + ++ +V+ + AAQ ++ AGF +E+H Sbjct: 119 GSVPPSAGGWTPQAPSALPFDDGYSTPQAMSVEQIGALVQAFADAAQRALAAGFKVIELH 178 Query: 183 AANGYLLDQFLRDKSNQRTDAYGGSIENRARLLLEVVEAVTSVIPSER-VGIRLSPISPA 241 A+GYL QFL SNQR+D YGGS ENR R LLE+ A +V P E + +RLS A Sbjct: 179 GAHGYLGHQFLSPLSNQRSDEYGGSFENRIRFLLEITRATRAVWPEELPLLVRLS----A 234 Query: 242 NDIADS--NPEALFRYVVQQLNRYQLVYLHVVEGATGG 277 D D PE V R + + + +V+ ++GG Sbjct: 235 TDWVDGGWTPEE----TVTLSQRLRELGVDLVDVSSGG 268 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.136 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,261,891 Number of extensions: 56506 Number of successful extensions: 165 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 160 Number of HSP's successfully gapped: 3 Length of query: 368 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 281 Effective length of database: 1,207,925 Effective search space: 339426925 Effective search space used: 339426925 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)