BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3074.p
         (329 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312410|ref|YP_003776502.1| dienelactone hydrolase [Herbasp...   441   e-125

>gi|300312410|ref|YP_003776502.1| dienelactone hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 345

 Score =  441 bits (1134), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 222/296 (75%), Positives = 247/296 (83%), Gaps = 6/296 (2%)

Query: 33  RWFFFIYGLLLAWPAL-VPAASLPPAQTVRFPSADGSTALTGYLFSPFGPGPHPAMVLLH 91
           RW FF     LAW  L + A +LPPAQTV FPSADG T LT YLF+P G GPHPA+V+LH
Sbjct: 49  RWLFFA----LAWLTLPLAAQTLPPAQTVHFPSADGRTELTAYLFTPAGAGPHPAVVMLH 104

Query: 92  GRAGLYSSRINAQCTQIGPAIPSPCDASTLSARHRAWAAYWLARGYLVLLVDSFGPRGVA 151
           GRAG YSSRIN  CT+IGPA+PSPCDASTLS RH+AWAAYW+ RGYL LLVDS+GPRGVA
Sbjct: 105 GRAGPYSSRINGDCTRIGPALPSPCDASTLSQRHQAWAAYWIERGYLALLVDSYGPRGVA 164

Query: 152 HGFGRHTHGTPQRAAVNELSVRPLDAEGALTWLAGRDDVDPRRIMLQGWSNGGSTALNVM 211
           HGFGRHTHG P+RA VNEL+VRPLDAEGAL WLA R DV+P RI+LQGWSNG STALNVM
Sbjct: 165 HGFGRHTHGAPERAEVNELTVRPLDAEGALAWLAPRSDVNPARILLQGWSNGASTALNVM 224

Query: 212 QRQAQRPAGS-PSFAAALVFYPGCGPQALLSRRPEIDKPIQVLLGAADAEVSPLTCQRVL 270
           QRQA R  G+ PSFA A+VFYPGCGPQALLS  PE+D+P+QVLLGAAD EVSP  C RVL
Sbjct: 225 QRQASRLGGTAPSFAGAMVFYPGCGPQALLSSSPELDRPVQVLLGAADQEVSPQRCLRVL 284

Query: 271 RHAIPIRQTSAPVVTLYPGATHDFDDPERARQAIDANQAARQDALTRLGPWLDRLP 326
           R AIP+R+ S+PVVTLYPGATHDFDDP R RQAI AN+ AR DALTRLGPW D++P
Sbjct: 285 RQAIPMRRNSSPVVTLYPGATHDFDDPGRPRQAIPANRQARADALTRLGPWADQVP 340


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,149,801
Number of extensions: 50393
Number of successful extensions: 145
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 243
Effective length of database: 1,212,660
Effective search space: 294676380
Effective search space used: 294676380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)