BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3069.p
         (253 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312404|ref|YP_003776496.1| uroporphyrinogen-III C-methyltr...   478   e-136
gi|300311963|ref|YP_003776055.1| precorrin-4 C11-methyltransfera...    88   6e-19

>gi|300312404|ref|YP_003776496.1| uroporphyrinogen-III
           C-methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 253

 Score =  478 bits (1229), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 246/253 (97%), Positives = 251/253 (99%)

Query: 1   MATQQAATSLSSDSPAPSPEHPGMVWLVGSGPGAADLLTVRAARLLAQAEIVLHDALVTP 60
           MATQQAATS SSDSPAPSPEHPGMVWLVGSGPGAADLLTVRAARLLAQAEIVLHDALVTP
Sbjct: 1   MATQQAATSHSSDSPAPSPEHPGMVWLVGSGPGAADLLTVRAARLLAQAEIVLHDALVTP 60

Query: 61  DILALCPQAVLVSVGKRSGQRSTAQPVINQKLVEAAQQYRRVVRLKGGDPMLFGRADEEM 120
           DILALCPQAVLVSVGKRSGQRSTAQPVINQKLVEAAQQYRRVVRLKGGDPMLFGRADEEM
Sbjct: 61  DILALCPQAVLVSVGKRSGQRSTAQPVINQKLVEAAQQYRRVVRLKGGDPMLFGRADEEM 120

Query: 121 RALEEHNIPFEIVPGITAALAAASAAKRPLTRRGIARSVSLFTSSTGVDEPNEVRMPNGD 180
           RALEEH+IP+EIVPGITAALAAASAAKRPLTRRGIARSVSLFTSSTGVDEP+EVRMPNGD
Sbjct: 121 RALEEHHIPYEIVPGITAALAAASAAKRPLTRRGIARSVSLFTSSTGVDEPDEVRMPNGD 180

Query: 181 TLVQYMGGREATATAQRLLALGHAPETPVVVVENCSRADQHIYHLQLAGLEAGLQACSGP 240
           TLVQYMGGREATATAQRLLALGHAP+TPVVVVENCSR DQHIYHLQLAGLEAGLQACSGP
Sbjct: 181 TLVQYMGGREATATAQRLLALGHAPDTPVVVVENCSRPDQHIYHLQLAGLEAGLQACSGP 240

Query: 241 VLVMIGPALADRN 253
           VLVMIGPALADR+
Sbjct: 241 VLVMIGPALADRH 253


>gi|300311963|ref|YP_003776055.1| precorrin-4 C11-methyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 258

 Score = 88.2 bits (217), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 73/210 (34%), Positives = 110/210 (52%), Gaps = 14/210 (6%)

Query: 25  VWLVGSGPGAADLLTVRAARLLAQAEIVLH-DALVTPDILALC-PQAVLVSVGKRSGQRS 82
           V+ VG+GPGAADL+T+R ARLL Q  +VL+  +LV   +L  C P A ++       ++ 
Sbjct: 3   VYFVGAGPGAADLITLRGARLLGQVRMVLYAGSLVPTALLEHCHPAAEIIDTAALDLEQQ 62

Query: 83  TAQPVINQKLVEAAQQYRRVVRLKGGDPMLFGRADEEMRALEEHNIPFEIVPGITAALAA 142
            A        V A +Q   VVRL  GDP ++G   E+MR L+   I +E+VPG+++  AA
Sbjct: 63  QA------CYVRAQEQGIDVVRLHSGDPAIYGATAEQMRRLDALGIAYEVVPGVSSFTAA 116

Query: 143 ASAAKRPLTRRGIARSVSLFTSS---TGVDEPNEVR--MPNGDTLVQYMGGREATATAQR 197
           A+A    LT+  +++SV L   S   + V E   +     +  T+  ++ G         
Sbjct: 117 AAAVSAELTKPEVSQSVILTRVSGRASAVPESESIASLAAHRATMCIFLSGPHLKKIVTD 176

Query: 198 LLALGHAPETPVVVVENCSRADQHIYHLQL 227
           LL L + P TPV +V   +  +Q IY  QL
Sbjct: 177 LL-LHYPPATPVTLVYRATWPEQRIYQGQL 205


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.131    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 745,345
Number of extensions: 28569
Number of successful extensions: 136
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 2
Length of query: 253
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 170
Effective length of database: 1,226,865
Effective search space: 208567050
Effective search space used: 208567050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)