BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3068.p (443 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312403|ref|YP_003776495.1| sulfate adenylyltransferase sub... 886 0.0 gi|300309454|ref|YP_003773546.1| GTPase translation elongation f... 82 1e-16 gi|300309440|ref|YP_003773532.1| EF-Tu elongation factor protein... 82 1e-16 >gi|300312403|ref|YP_003776495.1| sulfate adenylyltransferase subunit 1 protein [Herbaspirillum seropedicae SmR1] Length = 443 Score = 886 bits (2289), Expect = 0.0, Method: Compositional matrix adjust. Identities = 436/443 (98%), Positives = 440/443 (99%) Query: 1 MNAAATQAQLAQASAQSHERGLLRFITAGSVDDGKSTLIGRLLFDSKGIFADQLDAISRA 60 MNAAATQAQLAQ +A SHERGLLRFITAGSVDDGKSTLIGRLLFDSKGIFADQLDAISRA Sbjct: 1 MNAAATQAQLAQTAAPSHERGLLRFITAGSVDDGKSTLIGRLLFDSKGIFADQLDAISRA 60 Query: 61 KHKRTVGDTVDLSLLTDGLEAEREQGITIDVAYRYFATPKRKFIIADTPGHEQYTRNMVT 120 KHKRTVGDTVDLSLLTDGLEAEREQGITIDVAYRYFATPKRKFIIADTPGHEQYTRNMVT Sbjct: 61 KHKRTVGDTVDLSLLTDGLEAEREQGITIDVAYRYFATPKRKFIIADTPGHEQYTRNMVT 120 Query: 121 GASTADAVIILVDVSKVKLGDDGSVELLTQTKRHSTIAHLLQIQHVIVAVNKMDLVDYDQ 180 GASTADAVIILVDVSKVKLG+DGSVELLTQTKRHSTIAHLLQIQHVIVAVNKMDLVDYDQ Sbjct: 121 GASTADAVIILVDVSKVKLGEDGSVELLTQTKRHSTIAHLLQIQHVIVAVNKMDLVDYDQ 180 Query: 181 TVYDRIVGAYQQFAQQLGLQDVHAIPLSALAGDNVVEASARMPWYQGPTLITLLESLSVY 240 TVYDRIVGAYQQFAQQLGLQDVHAIPLSALAGDNVVEASARMPWYQGPTLITLLESLSVY Sbjct: 181 TVYDRIVGAYQQFAQQLGLQDVHAIPLSALAGDNVVEASARMPWYQGPTLITLLESLSVY 240 Query: 241 EDAHEEAFRFPVQLVARHNGHEANDFRGYMGRIEAGKVARGDKLVVLPSGQSATVKDIQT 300 EDAHEEAFRFPVQLVARHNGHEANDFRGYMGRIEAGKVARGDKLVVLPSGQSATVKDIQT Sbjct: 241 EDAHEEAFRFPVQLVARHNGHEANDFRGYMGRIEAGKVARGDKLVVLPSGQSATVKDIQT 300 Query: 301 LDGSLESAAAGQSVTILLDEYLDISRGDLLASAAQPSTILKSVNADVCWLSEEPLDLRRK 360 LDGSLESA+AGQSVTILLDEYLDISRGDLLASAAQPSTILK+VNADVCWLSEEPLDLRRK Sbjct: 301 LDGSLESASAGQSVTILLDEYLDISRGDLLASAAQPSTILKTVNADVCWLSEEPLDLRRK 360 Query: 361 YWLKHTTKQVAARVAKVDTLLDINTQERRPAETLKLNDIARISVNVQQPIAADAYQDIRA 420 YWLKHTTKQVAARVAKVDTLLDINTQERRPAETLKLNDIARISVNVQQPIAADAYQ IRA Sbjct: 361 YWLKHTTKQVAARVAKVDTLLDINTQERRPAETLKLNDIARISVNVQQPIAADAYQAIRA 420 Query: 421 TGAFILIDEVSHQTVAAGMIRID 443 TGAFILIDEVSHQTVAAGMIRID Sbjct: 421 TGAFILIDEVSHQTVAAGMIRID 443 >gi|300309454|ref|YP_003773546.1| GTPase translation elongation factor TU [Herbaspirillum seropedicae SmR1] Length = 396 Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 103/410 (25%), Positives = 175/410 (42%), Gaps = 77/410 (18%) Query: 27 TAGSVDDGKSTL---IGRLLFDSKGIFADQLDAISRAKHKRTVGDTVDLSLLTDGLEAER 83 T G VD GK+TL I +L G A D I D E+ Sbjct: 17 TIGHVDHGKTTLTAAIATVLSKKFGGEAKAYDQI-------------------DAAPEEK 57 Query: 84 EQGITIDVAYRYFATPKRKFIIADTPGHEQYTRNMVTGASTADAVIILVDVSKVKLGDDG 143 +GITI+ A+ + T R + D PGH Y +NM+TGA+ D I++ + DG Sbjct: 58 ARGITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAA------DG 111 Query: 144 SVELLTQTKRHSTIAHLLQIQHVIVAVNKMDLVDYDQTVYDRIVGAYQQFAQQLGLQDVH 203 + QT+ H ++ + + ++IV +NK D+VD D + + + ++ + Sbjct: 112 P---MPQTREHILLSRQVGVPYIIVFLNKADMVD-DAELLELVEMEVRELLSKY------ 161 Query: 204 AIPLSALAGDN--VVEASARMPWY--QGP----TLITLLESLSVY----EDAHEEAFRFP 251 GD+ +V+ SA++ GP ++ L E+L Y E A + F P Sbjct: 162 -----EFPGDDLPIVKGSAKLALEGDTGPLGEQAIMALAEALDTYIPTPERAVDGTFLMP 216 Query: 252 VQLVARHNGHEANDFRGYM--GRIEAGKVARGD--KLVVLPSGQSATVKDIQTLDGSLES 307 V+ V +G RG + GR+E G + G+ ++V + Q T ++ L+ Sbjct: 217 VEDVFSISG------RGTVVTGRVERGIIKVGEEIEIVGIADTQKTTCTGVEMFRKLLDQ 270 Query: 308 AAAGQSVTILL--DEYLDISRGDLLASAAQPSTIL--KSVNADVCWLSEEPLDLRRKYWL 363 AG +V +LL + D+ RG +L A+P +I K ++ LS++ R + Sbjct: 271 GQAGDNVGVLLRGTKREDVQRGQVL---AKPGSIKPHKHFTGEIYVLSKDE-GGRHTPFF 326 Query: 364 KHTTKQVAARVAKVDTLLDINTQERRPAETLKLNDIARISVNVQQPIAAD 413 + Q R V +++ + E + D I+V + PIA + Sbjct: 327 NNYRPQFYFRTTDVTGAIELPKDK----EMVMPGDNVSITVQLINPIAME 372 >gi|300309440|ref|YP_003773532.1| EF-Tu elongation factor protein [Herbaspirillum seropedicae SmR1] Length = 396 Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 103/410 (25%), Positives = 175/410 (42%), Gaps = 77/410 (18%) Query: 27 TAGSVDDGKSTL---IGRLLFDSKGIFADQLDAISRAKHKRTVGDTVDLSLLTDGLEAER 83 T G VD GK+TL I +L G A D I D E+ Sbjct: 17 TIGHVDHGKTTLTAAIATVLSKKFGGEAKAYDQI-------------------DAAPEEK 57 Query: 84 EQGITIDVAYRYFATPKRKFIIADTPGHEQYTRNMVTGASTADAVIILVDVSKVKLGDDG 143 +GITI+ A+ + T R + D PGH Y +NM+TGA+ D I++ + DG Sbjct: 58 ARGITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAA------DG 111 Query: 144 SVELLTQTKRHSTIAHLLQIQHVIVAVNKMDLVDYDQTVYDRIVGAYQQFAQQLGLQDVH 203 + QT+ H ++ + + ++IV +NK D+VD D + + + ++ + Sbjct: 112 P---MPQTREHILLSRQVGVPYIIVFLNKADMVD-DAELLELVEMEVRELLSKY------ 161 Query: 204 AIPLSALAGDN--VVEASARMPWY--QGP----TLITLLESLSVY----EDAHEEAFRFP 251 GD+ +V+ SA++ GP ++ L E+L Y E A + F P Sbjct: 162 -----EFPGDDLPIVKGSAKLALEGDTGPLGEQAIMALAEALDTYIPTPERAVDGTFLMP 216 Query: 252 VQLVARHNGHEANDFRGYM--GRIEAGKVARGD--KLVVLPSGQSATVKDIQTLDGSLES 307 V+ V +G RG + GR+E G + G+ ++V + Q T ++ L+ Sbjct: 217 VEDVFSISG------RGTVVTGRVERGIIKVGEEIEIVGIADTQKTTCTGVEMFRKLLDQ 270 Query: 308 AAAGQSVTILL--DEYLDISRGDLLASAAQPSTIL--KSVNADVCWLSEEPLDLRRKYWL 363 AG +V +LL + D+ RG +L A+P +I K ++ LS++ R + Sbjct: 271 GQAGDNVGVLLRGTKREDVQRGQVL---AKPGSIKPHKHFTGEIYVLSKDE-GGRHTPFF 326 Query: 364 KHTTKQVAARVAKVDTLLDINTQERRPAETLKLNDIARISVNVQQPIAAD 413 + Q R V +++ + E + D I+V + PIA + Sbjct: 327 NNYRPQFYFRTTDVTGAIELPKDK----EMVMPGDNVSITVQLINPIAME 372 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.132 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,266,963 Number of extensions: 51815 Number of successful extensions: 164 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 163 Number of HSP's successfully gapped: 3 Length of query: 443 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 355 Effective length of database: 1,203,190 Effective search space: 427132450 Effective search space used: 427132450 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)