BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3059.p (662 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310609|ref|YP_003774701.1| outer membrane Iron(III) dicitr... 79 1e-15 gi|300310762|ref|YP_003774854.1| outer membrane ferric sideropho... 67 4e-12 gi|300313770|ref|YP_003777862.1| TonB-dependent siderophore rece... 62 1e-10 gi|300311951|ref|YP_003776043.1| siderophore (yersiniabactin/pes... 57 6e-09 >gi|300310609|ref|YP_003774701.1| outer membrane Iron(III) dicitrate transport protein [Herbaspirillum seropedicae SmR1] Length = 703 Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 165/736 (22%), Positives = 274/736 (37%), Gaps = 137/736 (18%) Query: 24 ALILSTLIPACWAGAATADLAQPLSAVVVSASRFPNDPAFAPV----------------- 66 +L + L A A+ A LA P++ + AS P P+ Sbjct: 8 SLFVRDLRITTTALASLAILAFPVAGLAQQASPSDGQPGLEPIQVSGDWLGTGLESSVKT 67 Query: 67 ---AATVITAEQIREAGIDNANEAIRKLGGVYGRQS--LAGPQ-DFPLDLRGFGTNGDQN 120 A TV+ ++I G + +A+R++ GV + AG + +RG Sbjct: 68 YPGARTVVKKQEIESTGAVSIGDAMRRIPGVQSSDNSGTAGSAIALNIGVRGLAGRYSPR 127 Query: 121 MVVLVDGVRISENELSTPLLSSIPIE--SIERIEIVRGGSSVLYGSGATGGTIQIITRR- 177 +L+DG+ ++ P LS P+ +IE I++VRGG +V +G GG I TR Sbjct: 128 STILLDGIPMAVAPYGQPQLSFAPLSLNNIESIDVVRGGGAVRFGPQNVGGIINFKTRSI 187 Query: 178 ---PQANAGHGTVLGEVGSNGLRAGRAVLA--RAWDNMSIDASYGKSHADNWRDNSRANQ 232 P + G G A +A + + Y WRD S + Sbjct: 188 PTTPGISGDAAVRYNSYGQGGGNTQYTAFAGGQAENGFGMAFLYSGQEGSGWRDKSDEHL 247 Query: 233 ENFATTVQW-FASDWRFGLRANLARADFGLPGSLSQAQYDANARQTTKPLDHGSYDNDSI 291 +FA +++ + + N PG LS AQY A+ Q+T+ D+ Sbjct: 248 NDFALKMRYEISPTSELYAKINYYDVLSRTPGGLSVAQYAADPFQSTRQRDN-------- 299 Query: 292 TAFLERRFGAFDVAA--ELAHREKIARSTYVSSGS--SSQVNIRSTQFS--PR------- 338 + R G FDV ++ R++ TY S + S+ +N T+ S PR Sbjct: 300 --WGGTRKG-FDVGYLNTISDRQEFEIRTYFSQATRQSTLINPAGTRLSHQPRNYETLGI 356 Query: 339 --------------------LRHLIERGP---WKNEAIAGIDLAEWSSFNNASYGNSDAS 375 R++ ERG + + G+ L+ ++ F N S Sbjct: 357 EPRYTQRFAWGGTTHDVTVGYRYVRERGDDNVYSEAVLTGV-LSGFTQFQN--------S 407 Query: 376 QHSKALYLRDEIEFDHNARLAAGVRRELFTQQ----SNSGAYGRTSAVNAWDVQASYAPL 431 + A Y+ D+I F R+ G+R E +N+ +Y ++ + +Y Sbjct: 408 TDAHAGYIDDKIAFGK-WRITPGLRFEHVQSTRYDVANNASYQVSNNKPLPSINVAYLLT 466 Query: 432 PLLRGFTKIGQSYRLATPDENGFTALPIGAVLKPQVSHDLELGATLGNAARQLTLRWFRH 491 L F+ S+ + + + L P+++ +E G +RW Sbjct: 467 EQLTLFSNYNTSFGVVQNSQ--LNTMSSANPLSPELAKTIEGG-----------VRWKSA 513 Query: 492 RVRDE-----LYYDPTANGGFGANS----NLAATRHQGVELEGRV---QLSETLGWS--A 537 R E + +D G N N+ T+H G+EL Q S GWS A Sbjct: 514 RASAEATVFHIDFDNQIVSVQGTNPSVFRNIGKTQHDGIELAMDYAFDQQSVLKGWSVYA 573 Query: 538 TYQHINARFDEGDNSGKQLALVPANTLSTRINWKSGQHSADVGARWVDRQRMGNDFANTC 597 Y + A G N GK L T + +KSG ++ RQ +D ANT Sbjct: 574 NYTYTRALQKSGANPGKDLPFYARTTDTVGTRFKSGPWGFNLSTTHQGRQF--SDEANTI 631 Query: 598 A--------RMPSFTSFDARYALRV---SAWEFAVTGTNLANRKYYSQAYDCSGGAVSGI 646 A +P F ++A+ +V ++ NL +R+Y+++ D + G + G Sbjct: 632 AESADGSIGEIPGFRLWNAQVDWKVPGTKGFDVFAGINNLTDRRYFTRTTDNNLGKLVGA 691 Query: 647 YPEDGRAIKFTARYDF 662 R + RY F Sbjct: 692 ----PRTVYVQGRYSF 703 >gi|300310762|ref|YP_003774854.1| outer membrane ferric siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 717 Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 85/308 (27%), Positives = 126/308 (40%), Gaps = 52/308 (16%) Query: 381 LYLRDEIEFDHNARLAAGVRRELFTQQSNSGAYGRTSAVNA----------WD-VQASYA 429 LY++D+I + ++ AG+R + F S + G S A W+ + +A Sbjct: 436 LYVQDKITLAAHWKMLAGLRWDRFEVDSRNRRNGVRSERTAHALSPRIGVVWEALPGQHA 495 Query: 430 PLPLLRGFTKIGQSYRLATPDENG-FTALPIGAVLKPQVSHDLELGATLGNAARQL--TL 486 L + F +G TPD G F L KPQ S +E G R+L TL Sbjct: 496 YLSWSKNFAPVGGDVIGITPDARGNFNDL------KPQFSRQVEAGIKSEWLDRRLSTTL 549 Query: 487 RWFRHRVRDELYYDPTANGGFGANSNLAATRHQGVELEGRVQLSETL----GWS------ 536 WF+ + + DP GF S L R++G+EL +L+ GW+ Sbjct: 550 AWFQLELFNRNVADPV-RPGFFEQSGL--ERNRGIELSVEGELAAPWFVRAGWAIQSAKI 606 Query: 537 --ATYQHINARFDEGDNSGKQLALVPANTLSTRINWKSGQHSADVGARWVDRQRMGNDFA 594 A + + R G L L A TL W + GAR+ DR Sbjct: 607 VQAEPKFVGKRASGVSGRGGSLFLSYAPTL----GWFAELGLTVEGARYADR-------- 654 Query: 595 NTCARMPSFTSFDARYALRVSAWEFAVTGTNLANRKYYSQAYDCSGGAVSGIYPEDGRAI 654 + +P++T +D + R+ EF + TNLANR+YY S +S + P RA+ Sbjct: 655 DNLLELPAYTRWDGKMGYRLDEAEFTLAVTNLANRRYYE-----SATGLSQVRPGAPRAL 709 Query: 655 KFTARYDF 662 TA Y F Sbjct: 710 LLTAAYKF 717 Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 59/201 (29%), Positives = 98/201 (48%), Gaps = 24/201 (11%) Query: 46 PLSAVVVSASRFPNDPAFAPVAATVITAEQIREAGIDNANEAIRKLGGVYGRQSLAGPQD 105 P + V +A+R DP P + ++ EQ+ G A L GV G S++ + Sbjct: 62 PRARRVGTATRSAADPMEVPQSIQSVSVEQVSVYG---ARTLAGALLGVPGISSISDTRF 118 Query: 106 FPLDLRGFGTNGDQNMVVLVDGVRISENELSTPLLSSIPIESIERIEIVRGGSSVLYGSG 165 +RGF + D +L+DG+R + + +IER+E++RG +SVLYG G Sbjct: 119 DAFRIRGFSSAND----LLLDGMRDDPQYVRG-------LGNIERVEVLRGPASVLYGRG 167 Query: 166 ATGGTIQIITRRPQANAGHGTVLGEVGSNGLRAGRAV-----LARAWDNMSIDASYGKSH 220 + GG I I+++P + L +GS GL G A+ LA W ++ + G+ H Sbjct: 168 SGGGVINRISKQPGQDVASQATL-SLGSAGL-LGAALDWNRPLAPHW---ALRINTGREH 222 Query: 221 ADNWRDNSRANQENFATTVQW 241 A ++RD ++ FA ++W Sbjct: 223 AGSFRDTVNGTRQYFAPALKW 243 >gi|300313770|ref|YP_003777862.1| TonB-dependent siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 696 Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 159/680 (23%), Positives = 262/680 (38%), Gaps = 85/680 (12%) Query: 38 AATADLAQPLSAVVVSASRF-PNDPAFAPVAATVITAEQIREAGIDNANEAIRKLGGVYG 96 A++ D A L V VS R P + +I A+++++ + E + GV Sbjct: 47 ASSEDAALTLGTVEVSGRRSGPLQLRNVLTSVDLIGADRLQQQQVLYNWELFAQSPGVML 106 Query: 97 RQSLAGPQDFPLDLRGFGTNGDQNMV-VLVDGVRISENELSTPLLSSIPIESIERIEIVR 155 Q G + L RGF G+ N V +L+DGV ++N P L ++ + IE+VR Sbjct: 107 TQFRQGNESGKLSFRGFNGEGEVNAVKLLIDGVPSNDNAGGMPFLGTLFPLDMAGIEVVR 166 Query: 156 GGSSVLYGSGATGGTIQIITRRPQANAGHGTVLGEVGSNGLRAGRAVLARAWDNMSIDAS 215 G + YG G + I+TR+ G + ++ + V W S + Sbjct: 167 GTNDARYGLHNIAGNVNILTRQGGNYDEARLTYGSFNTRQVQVAKGVENGNW---SQNYF 223 Query: 216 YGKSHADNWRDNSRANQENFATTVQWFASD----WRFGLRANLARADFGLPGSLSQAQYD 271 G +D +R++++A EN A + +WF + +R GL A A PG L+ Sbjct: 224 LGYEKSDGYREHAQA--ENIAFSGKWFYTSDDGRYRTGLSIRHANAYAQEPGYLTAEDAR 281 Query: 272 ANARQT--TKPLDHGSYDNDSITAFLERRFGAFD----VAAEL-AHREKIARSTYVSSGS 324 AN R + D G+ D ++ + G D V A+L +R + R SS + Sbjct: 282 ANPRTSYAYAQSDGGNRQLDQVSLHFD---GDIDDQLAVGAKLYLNRVRDQRWLRYSSTT 338 Query: 325 SSQVNIRSTQFSPRLRHLIERGPWKNEAIAGI-DLAEWSSFN--------------NASY 369 S Q + + R WK A+ G+ DLA FN N Sbjct: 339 SQQERLIDETHYGLMTTATYRPQWK--ALEGMNDLALEGGFNVERQEDQSPRFNTVNKVR 396 Query: 370 GNSDASQH----SKALYLRDEIEFDHNARLAAGVRREL----FTQQSNSGAYG--RTSAV 419 H + YL+ I+ + ++ G R + F+ S YG + Sbjct: 397 VTQTRDHHFTFDTFGAYLQAVIKPVESFKIIPGYRVDKVGGSFSDPSRGVRYGIQDYGVI 456 Query: 420 NAWDVQASYAPLPLLRGFTKIGQSYRLATPDENGFTALPIGAV-LKPQVSHDLELGATLG 478 + YAP+ + G+++++ G A L+P ++ E G Sbjct: 457 RQPKLSVVYAPIKQASLYANWGRTFQVGA----GAAAYKSNNNDLRPSINDGWESGVKFT 512 Query: 479 NAA-RQLTLRWFRHRVRDEL---YYDPTANGGFGANSNLAATRHQGVELEGRVQLSETLG 534 L W+ R DE+ DPT G + N+ T+ GV+L+ ++ + Sbjct: 513 PVEWLDGRLAWWEQRASDEVKRRLNDPT-----GDSENVGRTKRSGVDLQLNLRAGKRTT 567 Query: 535 WSATYQHINARFDEGDNS-----GKQLALVPANTLSTRINWKSGQHSADVGARWVDRQRM 589 Y + D + GK++ VP S ++++ + D Sbjct: 568 MWLAYSRQRSEIITPDPTAPATIGKEIDHVPRYLFSGGVDYQ----ATDYLKLSTSLNGQ 623 Query: 590 GNDF---ANTCARMPSFTSFDARYALRVS---AWEFAVTGTNLANRKY-YSQAYDCSGGA 642 G+ + ANT + +T DA + +VS A E V NLANR Y Y D + A Sbjct: 624 GSYYLTTANTGGKFGGYTLVDASASYQVSPTLALELQV--KNLANRYYEYVWINDQTRHA 681 Query: 643 VSGIYPEDGRAIKFTARYDF 662 P DGRA +A+ + Sbjct: 682 -----PGDGRAAYLSAKLTY 696 >gi|300311951|ref|YP_003776043.1| siderophore (yersiniabactin/pesticin) receptor FyuA protein [Herbaspirillum seropedicae SmR1] Length = 703 Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 89/345 (25%), Positives = 139/345 (40%), Gaps = 65/345 (18%) Query: 32 PACWAGAATADLAQPLSAVVVSASRFPNDPAFAPVAATVITAEQ--IREAGIDNANEAIR 89 P AD L+ V+V+A++ + V +V+ EQ + +A + N + R Sbjct: 26 PVLAQQVGAADERTRLAPVIVTANK--REQTLESVNGSVVVLEQPQLDDAQVRNTQDLGR 83 Query: 90 KLGGVYGRQSLAGPQDFPL-DLRGFGTNGD---QNMVVLVDGVRISENELSTPLLSSIPI 145 L GV + + +G +PL +RG + D + + VDGV P+L + + Sbjct: 84 VLPGV--QMAGSGSMHYPLISVRGVTSAQDFYNPALTLYVDGVP------QMPILVNQSL 135 Query: 146 ESIERIEIVRGGSSVLYGSGATGGTIQIITRRPQANAGHGTVLGEVGSNG-LRAGRAVLA 204 +ER+E+++G LYG A GG I + TR+P G G +G L G L Sbjct: 136 LDVERVELLKGPQGTLYGKSAEGGVINVTTRQPDNTVRAGLRAGWSSRDGNLLEGTLALP 195 Query: 205 RAWDNMSIDASYGKSHADNWRDNSRANQENFATTVQWFASDWRFGL--RANLARADFGLP 262 D + AS H D++ + N AT +D + G+ R+ + R P Sbjct: 196 LVKDMLY--ASVALRH-----DDAPGDLHNPAT-----GADRQGGVRSRSGMVRLRLAPP 243 Query: 263 GSLSQAQYDANARQTTKPLDHGSYDNDSITAFLERRFGAFDVAAELAHREKIARSTYVSS 322 G+ QA A R+ + D+ AF + +R YV S Sbjct: 244 GAPWQASL-AAGRECARS------RQDAYVAF----------------NDIDSRKIYVQS 280 Query: 323 GSSSQVNIRSTQFSPR-------LRHLIERGPWKNEAIAGIDLAE 360 G + T FS R L + + GPWK A+AG AE Sbjct: 281 GMPKAL----TDFSQRRCGDSQSLSAVYDGGPWKLSALAGWQQAE 321 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.132 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,072,307 Number of extensions: 85433 Number of successful extensions: 299 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 297 Number of HSP's successfully gapped: 9 Length of query: 662 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 571 Effective length of database: 1,188,985 Effective search space: 678910435 Effective search space used: 678910435 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)