BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3058.p
         (341 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313668|ref|YP_003777760.1| Fe3+-siderophore ABC transporte...   132   3e-32

>gi|300313668|ref|YP_003777760.1| Fe3+-siderophore ABC transporter
           permease [Herbaspirillum seropedicae SmR1]
          Length = 364

 Score =  132 bits (333), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 109/293 (37%), Positives = 161/293 (54%), Gaps = 9/293 (3%)

Query: 48  SAPADSVALLLSLRVPRALTAFAVGGALALSGALMQILLRNPLADPYVLGLSGGSAAGAL 107
           +APA    ++   R+P A+ A  VG  L L G  MQ +L NPLA PY LG+S    A A 
Sbjct: 74  AAPAGLRVVVWEFRLPTAVMALLVGMCLGLGGGEMQTVLDNPLASPYTLGIS----AAAA 129

Query: 108 LAMLVALPLGWPLQLVTAPGALLGAGLAMLLLFGLVRQSLRHLAISPLLSSQRLLLTGVM 167
               +A+   W    + A   +     A  L   LV   L  +A     S+  ++L G+ 
Sbjct: 130 FGAALAITFNWRFPALPAGMTVSACACAAALASVLV---LERVARWRGGSTLGVILFGIA 186

Query: 168 LAAGFGALISLALSVAPDAQLRGMVFWLIGDLDDARLLPLAALVLLLALL--WTLRHAPS 225
           L   F ALI L   VA +  L+G+VFW +G L  A    +A L L  AL+  ++LR A  
Sbjct: 187 LVYSFQALIMLLQFVASEEALQGIVFWTMGSLARASWTTVAILGLAFALVAPFSLRDAWK 246

Query: 226 LNLLARGDAFAQLLGVPVLRLRVMSLCVAAACTAVAVAMAGTIGFVGLVVPHGLRLVIGN 285
           L  L  G+  A   G+ + RLR++SL   +   A++V+  GTIGFVGLV PH  RL++G 
Sbjct: 247 LTALRLGEERAASFGIDMPRLRMLSLLRISVLAALSVSFVGTIGFVGLVAPHIARLLLGE 306

Query: 286 EQRLLLPASVLAGGAALTLADLLARTVVAPVQLPVGVITALIGVPCFLWLLSR 338
           + R  LP S +AGG  ++LA + ++T++  V +PVG++T+L+G+P FL ++ R
Sbjct: 307 DHRYYLPGSAMAGGLIISLASVASKTLLPGVLIPVGIVTSLVGIPLFLIIVLR 359


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.141    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 652,209
Number of extensions: 16775
Number of successful extensions: 158
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 255
Effective length of database: 1,212,660
Effective search space: 309228300
Effective search space used: 309228300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 131 (55.1 bits)