BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3057.p (260 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPa... 100 2e-22 gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPa... 96 4e-21 gi|300312808|ref|YP_003776900.1| glutamine ABC transporter ATPas... 94 1e-20 gi|300309583|ref|YP_003773675.1| amino acid ABC transporter ATPa... 92 6e-20 gi|300313259|ref|YP_003777351.1| ABC transporter ATPase [Herbasp... 91 1e-19 >gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 99.8 bits (247), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 119/225 (52%), Gaps = 3/225 (1%) Query: 4 LLQARQVSLQAGSRLLLEGLDWAVRPGEFWCVLGRNGIGKSTLLHAAAGLLMTQAGQWSL 63 +++ +++S G +L+ + +V GE C++G +G GKST+L GL + G + Sbjct: 1 MIEVKRISKCFGRHEVLKDVSLSVAQGEVVCLIGPSGSGKSTVLRCINGLESYERGDILI 60 Query: 64 QGQPLTQLAPDLMA-RWRGLLLQHQYDAFAMPLIDAVLAGRFVHHGGWSRRDEDRTLAMR 122 GQ + + PD+ R R ++ +++ F + + ++ G +R + R+ AM Sbjct: 61 DGQRVDRDGPDIHRLRTRVGMVFQRFNLFPHRTVLENVTEGPIYVNGLAR-AQARSEAMS 119 Query: 123 ALEQVGLAALAGADLLQLSGGERQRVALATLLAQDPALYLLDEPTSHQDIAAQLQIMRLL 182 L++VGLAA A QLSGG++QRVA+A LA P L DEPTS D +++ ++ Sbjct: 120 LLDKVGLAARCDAYPAQLSGGQQQRVAIARSLAMQPEAILFDEPTSALDPELVGEVLAVM 179 Query: 183 RTLAAQGKGVVASCHDINLASRFASHILLL-GGQRRWAGPTAEVM 226 RTLAA G ++ H++ A A + L G +G A+V+ Sbjct: 180 RTLAADGMTMIVVTHEMGFAREVADRVCFLHSGSIVESGAAAQVL 224 >gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 95.5 bits (236), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 116/226 (51%), Gaps = 9/226 (3%) Query: 4 LLQARQVSLQAGSRLLLEGLDWAVRPGEFWCVLGRNGIGKSTLLHAAAGLLMTQAGQWSL 63 +++ ++ + GS +L G+ +V G+ ++GR+G GKST+L GL G ++ Sbjct: 3 IVEINNITKRFGSNQVLNGISLSVERGQVVAIIGRSGSGKSTMLRCINGLETIDGGSITV 62 Query: 64 QGQPLTQLAPDLMARWR--GLLLQHQYDAFAMPLIDA--VLAGRFVHHGGWSRRDEDRTL 119 G LT L+ + G++ QH Y+ F ++ +L+ R V + + R Sbjct: 63 AGHKLTHKHEHLIELRKDVGMVFQH-YNLFPHLTVEENIMLSPRIVKK---TATETARET 118 Query: 120 AMRALEQVGLAALAGADLLQLSGGERQRVALATLLAQDPALYLLDEPTSHQDIAAQLQIM 179 A++ L+QVGL A QLSGG++QRVA+A LA +P + L DE TS D +++ Sbjct: 119 AIKVLKQVGLDHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPELTAEVL 178 Query: 180 RLLRTLAAQGKGVVASCHDINLASRFASHILLLGGQRRW-AGPTAE 224 +++ LA G ++ H++ A R A + + + W A P+ E Sbjct: 179 KVMEELARGGMTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSEE 224 >gi|300312808|ref|YP_003776900.1| glutamine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 240 Score = 94.0 bits (232), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 64/211 (30%), Positives = 112/211 (53%), Gaps = 4/211 (1%) Query: 4 LLQARQVSLQAGSRLLLEGLDWAVRPGEFWCVLGRNGIGKSTLLHAAAGLLMTQAGQWSL 63 +++ + VS + GS ++L+G++ +R GE ++G +G GKSTLL L G + Sbjct: 1 MVEFKSVSKRFGSNVVLDGINLTIRKGEVVVLIGPSGSGKSTLLRCINALEEIDGGDLLV 60 Query: 64 QGQPLTQLAPDLMA-RWRGLLLQHQYDAFAMPLIDAVLAGRF-VHHGGWSRRDEDRTLAM 121 G + + + A R ++ Q++ F P + A+ F H + +E LA Sbjct: 61 DGISVLSGSSSVRAIRQEAGMVFQQFNLF--PQLTALENVAFGPRHVRGASSEEANALAS 118 Query: 122 RALEQVGLAALAGADLLQLSGGERQRVALATLLAQDPALYLLDEPTSHQDIAAQLQIMRL 181 L +VGLA +LSGG++QRVA+A LA P L L DEPTS D + +++R+ Sbjct: 119 ELLAKVGLAERKHHYPNELSGGQQQRVAIARALAVRPKLMLFDEPTSALDPELRQEVLRV 178 Query: 182 LRTLAAQGKGVVASCHDINLASRFASHILLL 212 +++LA +G ++ H+I+ A R + ++ + Sbjct: 179 MQSLAEEGMTMIVVTHEISFARRVGTRLIFM 209 >gi|300309583|ref|YP_003773675.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 91.7 bits (226), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 119/230 (51%), Gaps = 8/230 (3%) Query: 1 MDCLLQARQVSLQAGSRLLLEGLDWAVRPGEFWCVLGRNGIGKSTLLHAAAGLLMTQAGQ 60 M +++ + V + GS +L G+ + V GE ++G++G GKST L L AGQ Sbjct: 1 MHTVVELQGVHKRFGSNTVLRGVSFQVARGEVVAIIGKSGSGKSTALRCINRLEQIDAGQ 60 Query: 61 WSLQGQPLTQLAPDL--MARWRGLLLQHQYDAFAMPLIDAVLAGRFVHHGGWSRR--DED 116 S+ G L DL + R G++ Q Y+ F P + VL + R D+ Sbjct: 61 ISVCGHALHAAGLDLRGLRRDVGIVFQG-YNLF--PHL-TVLQNITLGPTAVKRMPADQA 116 Query: 117 RTLAMRALEQVGLAALAGADLLQLSGGERQRVALATLLAQDPALYLLDEPTSHQDIAAQL 176 +TLA + L +VGLA AGA QLSGG++QRVA+A LA P L L DE TS D Sbjct: 117 QTLAQQVLARVGLADKAGAYPEQLSGGQQQRVAIARSLALQPQLMLFDEVTSALDPELTG 176 Query: 177 QIMRLLRTLAAQGKGVVASCHDINLASRFASHILLLGGQRRWAGPTAEVM 226 ++++++ +A++G ++ H++ A R A ++ + + W E++ Sbjct: 177 EVLKVMEQMASEGMTMILVTHEMAFARRVADQVIFMHQGQVWEQGGPEIL 226 >gi|300313259|ref|YP_003777351.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 247 Score = 90.5 bits (223), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 66/207 (31%), Positives = 101/207 (48%), Gaps = 21/207 (10%) Query: 5 LQARQVSLQAGSRLLLEGLDWAVRPGEFWCVLGRNGIGKSTLLHAAAGLLMTQAGQWSLQ 64 L R + G+R ++ + VR GE +LG NG GK+T + GL+ + G+ L Sbjct: 6 LVVRGLKKSYGARQVVRDVSMEVRSGEVVGLLGPNGAGKTTSFYMIVGLVPSDGGEIDLD 65 Query: 65 GQPLTQLA------------PDLMARWRGLLLQHQYDAFAMPLIDAVLAGRFVHHGGWSR 112 G+P+++LA P + +R L ++ I AVL R G Sbjct: 66 GEPISRLAIHKRATLGLSYLPQEASVFRKLTVEDN--------IRAVLELR-QEDGKPLS 116 Query: 113 RDEDRTLAMRALEQVGLAALAGADLLQLSGGERQRVALATLLAQDPALYLLDEPTSHQDI 172 RDE L ++ + L + L LSGGER+RV +A LA DP LLDEP + D Sbjct: 117 RDEIEGRLNNLLHELQIEKLRESQALSLSGGERRRVEIARALATDPRFVLLDEPFAGIDP 176 Query: 173 AAQLQIMRLLRTLAAQGKGVVASCHDI 199 A ++I R++R L +G GV+ + H++ Sbjct: 177 IAVIEIQRIVRFLKERGIGVLITDHNV 203 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.136 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 793,663 Number of extensions: 32672 Number of successful extensions: 456 Number of sequences better than 1.0e-08: 110 Number of HSP's gapped: 345 Number of HSP's successfully gapped: 120 Length of query: 260 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 177 Effective length of database: 1,226,865 Effective search space: 217155105 Effective search space used: 217155105 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 129 (54.3 bits)