BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3052.p
         (175 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312390|ref|YP_003776482.1| lipoprotein [Herbaspirillum ser...   334   2e-93
gi|300311082|ref|YP_003775174.1| transmembrane protein [Herbaspi...    55   2e-09

>gi|300312390|ref|YP_003776482.1| lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 175

 Score =  334 bits (857), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 158/175 (90%), Positives = 166/175 (94%)

Query: 1   MREPLFTCLRRHAGKCGAFLVALAMFGCDRNGNPIEEFGLDKLQKGISSEADVRGVMGQP 60
           M +P FT LRRHAGK GAFLVALAM GCDRNG PIEEFGLDKLQKGISSEADVR VMGQP
Sbjct: 1   MTDPFFTRLRRHAGKFGAFLVALAMLGCDRNGKPIEEFGLDKLQKGISSEADVRDVMGQP 60

Query: 61  DTVWEDGGGARTLEYPKGPEGIRTWMFAIGASGTLIDYRQVLTQEHFDTIRAGMTADQIR 120
           DTVW+DG GARTLEYPKGP+GIRTWMF+IGASGTLIDY+QVLTQEHFDTIRAGMTA+QIR
Sbjct: 61  DTVWDDGQGARTLEYPKGPQGIRTWMFSIGASGTLIDYQQVLTQEHFDTIRAGMTAEQIR 120

Query: 121 REFGRPRSVVQFARKNEEVWDWKYHYVHEDRLFNVHFDMNTRQVVRTSISEISGH 175
           R+FGRPRSVVQF RKNEEVWDWKYHYVHEDRLFNVHFDMNT+QVVRTSISEISGH
Sbjct: 121 RQFGRPRSVVQFGRKNEEVWDWKYHYVHEDRLFNVHFDMNTKQVVRTSISEISGH 175


>gi|300311082|ref|YP_003775174.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 177

 Score = 55.5 bits (132), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 45/97 (46%), Gaps = 2/97 (2%)

Query: 49  SEADVRGVMGQPDTVWEDGGGARTLEYPKGPEGIRTWMFAIGASGTLIDYRQVLTQEHFD 108
            E  V   +G P  V+ DG   R  EY  GP     +M  IG    LI Y QV T E+F 
Sbjct: 44  PEDQVVARLGPPTNVYPDGN-VRVFEYGAGPFSQYQYMARIGPDHRLISYEQVWTIENFR 102

Query: 109 TIRAGM-TADQIRREFGRPRSVVQFARKNEEVWDWKY 144
            IR    T   + R  GRP  V ++AR   E W++ Y
Sbjct: 103 AIRPKQDTKLDVLRRVGRPTEVTRYARIPFEAWNYGY 139


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.139    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 584,414
Number of extensions: 25293
Number of successful extensions: 51
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 2
Length of query: 175
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 96
Effective length of database: 1,245,805
Effective search space: 119597280
Effective search space used: 119597280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)