BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3048.p (346 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312386|ref|YP_003776478.1| sugar ABC transporter ATPase [H... 617 e-178 gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [H... 317 1e-87 gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC tra... 292 2e-80 gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [H... 281 6e-77 gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [H... 265 6e-72 >gi|300312386|ref|YP_003776478.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 349 Score = 617 bits (1590), Expect = e-178, Method: Compositional matrix adjust. Identities = 304/349 (87%), Positives = 320/349 (91%), Gaps = 3/349 (0%) Query: 1 MAAISLQGVCKQWGEAQAVKGIDFEVKSGDFTVLLGPSGCGKSTTLRLIAGLDKPTSGSI 60 MAAISLQGVCK WGEAQAV+ IDFEVK+G FTVLLGPSGCGKSTTLRLIAGLDKP+SGSI Sbjct: 1 MAAISLQGVCKHWGEAQAVRNIDFEVKAGQFTVLLGPSGCGKSTTLRLIAGLDKPSSGSI 60 Query: 61 HIGGQDVTQLPPAQRKISMVFQSYALFPHLNVRDNILFGVRVRKEPRTGYEARLKRVADI 120 HIGG+DVTQLPPAQRKISMVFQSYALFPHL+VRDNILFGVRVRKEPR GYE RLKRVADI Sbjct: 61 HIGGRDVTQLPPAQRKISMVFQSYALFPHLSVRDNILFGVRVRKEPRAGYETRLKRVADI 120 Query: 121 LGLTHLLERRPAQLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRALQ 180 LGL HLLERRPAQLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRALQ Sbjct: 121 LGLAHLLERRPAQLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRALQ 180 Query: 181 QQLKMTMIYVTHDQTEAMSMADQVILLREGRIEQDAPPADLYAQPATTFAARFIGTPPMN 240 QQL MTM+YVTHDQTEAMSMADQVILLREGRIEQDA PADLYAQPAT FAARFIGTPPMN Sbjct: 181 QQLNMTMVYVTHDQTEAMSMADQVILLREGRIEQDAAPADLYAQPATAFAARFIGTPPMN 240 Query: 241 LLPLEAHAEGLSVAGSELILKDLGQTPLHLGLRPEHIRLADA---GVPAVVDNVEYFGAD 297 LLPLE HAEGL ++GS++IL+DLGQTP LGLRPEHIRLADA VPAVV+ VEYFGAD Sbjct: 241 LLPLEPHAEGLVISGSDVILRDLGQTPWQLGLRPEHIRLADASDSSVPAVVETVEYFGAD 300 Query: 298 TIVAARIGTAPLLVRAPGQHKLRAGQAIHLAWHAEDQYFFERHSGLRRP 346 TI+ ARIG A LLVRAPGQH+L AG + LAW A DQYFF+ SGLRRP Sbjct: 301 TIIGARIGAASLLVRAPGQHRLGAGDPVRLAWDARDQYFFDPASGLRRP 349 >gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 317 bits (811), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 171/357 (47%), Positives = 228/357 (63%), Gaps = 17/357 (4%) Query: 1 MAAISLQGVCKQWGEAQAVKGIDFEVKSGDFTVLLGPSGCGKSTTLRLIAGLDKPTSGSI 60 MA++ ++ V KQ+G Q ++G+D ++ G+FTVL+GPSGCGKST LR++AGL++ T G I Sbjct: 1 MASVQIRAVKKQFGSTQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEITGGEI 60 Query: 61 HIGGQDVTQLPPAQRKISMVFQSYALFPHLNVRDNILFGVRVRKEPRTGYEARLKRVADI 120 IGG V + P R I+MVFQ+YAL+PH+ VRDN+ F + + K+ + + R+K+ ADI Sbjct: 61 LIGGTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKKDKAFVDERVKKAADI 120 Query: 121 LGLTHLLERRPAQLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRALQ 180 LGL LL+R P QLSGGQ+QRVA+GRAI+ D V L DEPLSNLDA+LR +MR EI+ L Sbjct: 121 LGLNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEIKELH 180 Query: 181 QQLKMTMIYVTHDQTEAMSMADQVILLREGRIEQDAPPADLYAQPATTFAARFIGTPPMN 240 Q+LK T IYVTHDQ EAM+MADQ++++R+G +EQ P DLY PA F A FIG+P MN Sbjct: 181 QRLKTTSIYVTHDQIEAMTMADQIVVMRDGLVEQRGRPLDLYDYPANLFVAGFIGSPAMN 240 Query: 241 LLP--LEAHAEGLSVA-----------GSELILKDLGQTPLHLGLRPEHIRLADA--GVP 285 +P L +A G V G+ L D GQ + G+RPEH+ + A G+ Sbjct: 241 FIPATLRRNATGAEVEFADGTRVPAPYGAALQGND-GQKVTY-GVRPEHLSIGAAGQGIA 298 Query: 286 AVVDNVEYFGADTIVAARIGTAPLLVRAPGQHKLRAGQAIHLAWHAEDQYFFERHSG 342 V VE GADT V +R G L +H AG IHL + F+ SG Sbjct: 299 TKVIVVEPTGADTEVFSRFGDTSLTSIFRERHDFGAGDVIHLVPDHSRTHLFDAESG 355 >gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 364 Score = 292 bits (748), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 164/362 (45%), Positives = 230/362 (63%), Gaps = 18/362 (4%) Query: 1 MAAISLQGVCKQWGEA----QAVKGIDFEVKSGDFTVLLGPSGCGKSTTLRLIAGLDKPT 56 MAAI L+ V K +G + GID E+ G+F V++GPSGCGKST LR++AGL++ + Sbjct: 1 MAAIHLKQVRKTYGAGTKAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEEIS 60 Query: 57 SGSIHIGGQDVTQLPPAQRKISMVFQSYALFPHLNVRDNILFGVRVRKEPRTGYEARLKR 116 SG I IG + V L P +R I+MVFQ+YAL+PH+ V N+ +G++++ ++ +AR++R Sbjct: 61 SGQIVIGDRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDARVQR 120 Query: 117 VADILGLTHLLERRPAQLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREI 176 A IL L LLER P QLSGGQ+QRVA+GRAI+ V L DEPLSNLDA+LR +MR EI Sbjct: 121 AAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEI 180 Query: 177 RALQQQLKMTMIYVTHDQTEAMSMADQVILLREGRIEQDAPPADLYAQPATTFAARFIGT 236 + L L+ T +YVTHDQ EAM++ ++I++ G EQ PA++YA+PATTF A FIG+ Sbjct: 181 QKLHASLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASFIGS 240 Query: 237 PPMNLLPLEAHAEGLSVAGSELILKDLGQTP----------LHLGLRPEHIRLADAGVPA 286 PPMNLL + A+G S S+ D+ + P LG+RPEH+ G A Sbjct: 241 PPMNLLQGKLSADGASFEVSKGNASDILRLPQPLTGAAGQERILGVRPEHLLPILDGSAA 300 Query: 287 ----VVDNVEYFGADTIVAARIGTAPLLVRAPGQHKLRAGQAIHLAWHAEDQYFFERHSG 342 V+ VE GA+ +V AR G L++R P ++R GQ I ++ A D ++F+ S Sbjct: 301 QLSLEVELVEALGAELLVHARCGGQALVLRCPANVQVRTGQRIGASFGAGDVHWFDVKST 360 Query: 343 LR 344 R Sbjct: 361 RR 362 >gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 377 Score = 281 bits (719), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 156/355 (43%), Positives = 225/355 (63%), Gaps = 18/355 (5%) Query: 1 MAAISLQGVCKQW-GEAQAVKGIDFEVKSGDFTVLLGPSGCGKSTTLRLIAGLDKPTSGS 59 MA ++++ + K + G A + G++ +++ G+F VL+GPSGCGKST LR++ GL++ + G Sbjct: 1 MAHVNIKQLRKTYDGRADVLAGLNLDIRDGEFCVLVGPSGCGKSTLLRMLCGLEEISGGE 60 Query: 60 IHIGGQDVTQLPPAQRKISMVFQSYALFPHLNVRDNILFGVRVRKEPRTGYEARLKRVAD 119 + IGGQ V LPPA+R I+MVFQSYAL+PH+NV N+ FG++V ++ +AR++ A Sbjct: 61 LAIGGQVVNHLPPAERGIAMVFQSYALYPHMNVYKNMAFGLKVAGNSKSDIDARIRHAAA 120 Query: 120 ILGLTHLLERRPAQLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRAL 179 IL + HLL+R P +LSGGQ+QRVA+GRAI+ + L DEPLSNLDA LR + R EI L Sbjct: 121 ILKIDHLLQRLPRELSGGQRQRVAIGRAIVRQPRLFLFDEPLSNLDAALRVQTRLEIAKL 180 Query: 180 QQQLKMTMIYVTHDQTEAMSMADQVILLREGRIEQDAPPADLYAQPATTFAARFIGTPPM 239 +QL T++YVTHDQ EAM++ D+++++ EGRI+Q P +LY QP F A FIG+P M Sbjct: 181 HRQLAATIVYVTHDQVEAMTLGDKIVVMHEGRIQQAGTPLELYQQPQNLFVAGFIGSPKM 240 Query: 240 NLLP-----LEAHAEGLSVAGSELILKD---LGQTP---LHLGLRPEHIR--LADAGVP- 285 N + + +AG +L D LG TP + LGLR E IR L D G P Sbjct: 241 NFFQGVVTRCDDSGVQVEIAGGLRLLADVDPLGVTPGAAVTLGLRAEQIREGLGD-GQPL 299 Query: 286 -AVVDNVEYFG-ADTIVAARIGTAPLLVRAPGQHKLRAGQAIHLAWHAEDQYFFE 338 VV+ VE+ G A+ + G ++VR G + GQ I L+ H+ + F+ Sbjct: 300 HGVVNLVEHLGEANFLYVTLDGGHDIVVRGDGNRNVDIGQPIALSVHSHAFHLFD 354 >gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 372 Score = 265 bits (676), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 134/295 (45%), Positives = 197/295 (66%), Gaps = 19/295 (6%) Query: 1 MAAISLQGVCKQWGEAQAVKGIDFEVKSGDFTVLLGPSGCGKSTTLRLIAGLDKPTSGSI 60 MAA+S++ + K++ + + ++ I+ E++ G+F V +GPSGCGKST LR+IAGL++ + G + Sbjct: 1 MAAVSIRNLAKRYDDNEVMRDINLEIEDGEFVVFVGPSGCGKSTLLRMIAGLEEISDGDL 60 Query: 61 HIGGQDVTQLPPAQRKISMVFQSYALFPHLNVRDNILFGVRVRKEPRTGYEARLKRVADI 120 IG + + ++P ++R ++MVFQSYAL+PH+++ DN+ FG+++ + + +A ++ A I Sbjct: 61 DIGARRMNEVPASKRGVAMVFQSYALYPHMSLYDNMAFGLKIAGKSKAEIDAAVQHAAKI 120 Query: 121 LGLTHLLERRPAQLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRALQ 180 L + HLL+R+P LSGGQ+QRVA+GRAI V L DEPLSNLDA LR +MR E L Sbjct: 121 LHIDHLLDRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEFAKLH 180 Query: 181 QQLKMTMIYVTHDQTEAMSMADQVILLREGRIEQDAPPADLYAQPATTFAARFIGTPPMN 240 LK TMIYVTHDQ EAM++AD++++L EGRIEQ P LY PA F A FIG+P MN Sbjct: 181 DDLKTTMIYVTHDQIEAMTLADKIVVLSEGRIEQVGSPQQLYHHPANRFVAGFIGSPKMN 240 Query: 241 LLP---LEAHAEGL------------SVAGSELILKDLGQTPLHLGLRPEHIRLA 280 + A+G+ +V GS L +GQ + LG+RPEH+ +A Sbjct: 241 FIDGTVAAIQADGVQVQLPGGGLQWAAVDGSTL---QVGQK-VTLGVRPEHLNIA 291 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.137 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,151,289 Number of extensions: 52141 Number of successful extensions: 591 Number of sequences better than 1.0e-08: 134 Number of HSP's gapped: 352 Number of HSP's successfully gapped: 147 Length of query: 346 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 260 Effective length of database: 1,212,660 Effective search space: 315291600 Effective search space used: 315291600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)