BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3045.p
         (688 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312383|ref|YP_003776475.1| methionyl-tRNA synthetase [Herb...  1351   0.0  

>gi|300312383|ref|YP_003776475.1| methionyl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 690

 Score = 1351 bits (3496), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 656/690 (95%), Positives = 672/690 (97%), Gaps = 2/690 (0%)

Query: 1   MSTSAPRQLFVTTALPYANGAFHIGHIMEYIQADIWVRFQRMQGNEVHFVGADDAHGAPI 60
           MSTSAPRQLFVTTALPYANGAFHIGHIMEYIQADIWVRFQRMQGNEVHFVGADDAHGAPI
Sbjct: 1   MSTSAPRQLFVTTALPYANGAFHIGHIMEYIQADIWVRFQRMQGNEVHFVGADDAHGAPI 60

Query: 61  MIAAEKANITPQEFVANIAAGRKQYLDGFHIAFDNWSSTDSPENHQLSQDIYRALRDEAK 120
           MIAAEKA ITPQ+FVANIAAGRKQYLDGFHIAFDNWSSTDSPENH+LSQ+IYRALRDEAK
Sbjct: 61  MIAAEKAGITPQQFVANIAAGRKQYLDGFHIAFDNWSSTDSPENHELSQEIYRALRDEAK 120

Query: 121 LISTKTIDQFYDPVKNMFLPDRYIKGECPKCGTKDQYGDSCEHCSAVYSPTDLKNPYSTL 180
           LISTKTIDQFYDPVKNMFLPDRYIKGECPKCGTKDQYGDSCE+CSAVYSPTDLKNPYSTL
Sbjct: 121 LISTKTIDQFYDPVKNMFLPDRYIKGECPKCGTKDQYGDSCENCSAVYSPTDLKNPYSTL 180

Query: 181 SGATPVMKSSEHFFFKLSDPKCVAFLREWALDNNRLQPEVANKAREWLDGEGGLGDWDIS 240
           SGATPVMKSSEHFFFKLSDPKCVAFLREWALD+NRLQPEVANKA+EWLDGEGGLGDWDIS
Sbjct: 181 SGATPVMKSSEHFFFKLSDPKCVAFLREWALDSNRLQPEVANKAKEWLDGEGGLGDWDIS 240

Query: 241 RDAPYFGIEIPDAPGKYFYVWLDAPIGYLASLKNYFVKTGRDFDAFMADDKTEQYHFIGK 300
           RDAPYFGIEIPDAPGKYFYVWLDAPIGYLASLKNYF KTGRDFDAFMADDKTEQYHFIGK
Sbjct: 241 RDAPYFGIEIPDAPGKYFYVWLDAPIGYLASLKNYFAKTGRDFDAFMADDKTEQYHFIGK 300

Query: 301 DITYFHTLFWPAMLKFAGRKTPTNVFAHGFITVSGEKMSKSRGTGISPLRYLDIGMNPEW 360
           DITYFHTLFWPAMLKFAGRKTP NVFAHGFITVSGEKMSKSRGTGISPLRYLDIGMNPEW
Sbjct: 301 DITYFHTLFWPAMLKFAGRKTPNNVFAHGFITVSGEKMSKSRGTGISPLRYLDIGMNPEW 360

Query: 361 LRYYIAAKLNAKVEDVDFNPDDFVARVNADLIGKYVNIASRAAGFIAKRFEGRVSTQWAT 420
           LRYYIAAKLNAKVEDVDFNPDDFVARVNADLIGKYVNIASRAAGFIAKRFEGRVSTQWAT
Sbjct: 361 LRYYIAAKLNAKVEDVDFNPDDFVARVNADLIGKYVNIASRAAGFIAKRFEGRVSTQWAT 420

Query: 421 ADDAFLVKLRGVADEIRSLYEQREYGKALRLVMEQADAINAYVDANKPWELAKDSARDAQ 480
           ADDAFL KLRGVADEIRSLYEQREYGKALRLVMEQADAINAYVDANKPWELAKDSARDAQ
Sbjct: 421 ADDAFLAKLRGVADEIRSLYEQREYGKALRLVMEQADAINAYVDANKPWELAKDSARDAQ 480

Query: 481 LHEVCSRLLEAFRILTIYLKPVLPQLAAQVETFLQVQPFQWSDVTAPLADGHVINAYSHL 540
           LHEVCSRLLEAFRILT+YLKPVLPQLAAQVE FLQVQPFQW DV  PLADGHVI+AYSHL
Sbjct: 481 LHEVCSRLLEAFRILTVYLKPVLPQLAAQVEAFLQVQPFQWGDVAMPLADGHVIHAYSHL 540

Query: 541 MQRVDPKMLDALF--EAPEAPAAAATEAAESAIEELAPEISIDDFAKVDLRIAKIVNCEA 598
           MQRVDPKMLDALF      A AA+   AAESAIE+LAPEI+IDDFAKVDLRIAKIVNCEA
Sbjct: 541 MQRVDPKMLDALFEAPEAPAAAASEAAAAESAIEDLAPEITIDDFAKVDLRIAKIVNCEA 600

Query: 599 VEGSTKLLRLTLDAGEGRTRNVFSGIASAYKPEELVGKLTVMVANLAPRKMKFGVSEGMV 658
           VEGSTKLLRLTLDAGEGRTRNVFSGIASAYKPEELVGKLT+MVANLAPRKMKFG+SEGMV
Sbjct: 601 VEGSTKLLRLTLDAGEGRTRNVFSGIASAYKPEELVGKLTLMVANLAPRKMKFGLSEGMV 660

Query: 659 LAASAKDEKANPGIYVLNPWPGAEPGMRVR 688
           LAASAKDEK++PGIY+LNPWPGAEPGMRVR
Sbjct: 661 LAASAKDEKSHPGIYILNPWPGAEPGMRVR 690


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,016,143
Number of extensions: 80024
Number of successful extensions: 218
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 218
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 596
Effective length of database: 1,184,250
Effective search space: 705813000
Effective search space used: 705813000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 134 (56.2 bits)