BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3038.p
         (193 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312374|ref|YP_003776466.1| intracellular protease/amidase ...   382   e-107
gi|300311582|ref|YP_003775674.1| intracellular protease/amidase ...    79   2e-16

>gi|300312374|ref|YP_003776466.1| intracellular protease/amidase
           [Herbaspirillum seropedicae SmR1]
          Length = 195

 Score =  382 bits (980), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 188/193 (97%), Positives = 191/193 (98%)

Query: 1   MAAKKILLLTGDFAEDYETMVPFQALQMVGHTVHAVCPGKKAGDKIKTAIHDFEGDQTYT 60
           MAAKKILLLTGDFAEDYETMVPFQALQMVGHTVHAVCPGKKAGDK+KTAIHDFEGDQTYT
Sbjct: 3   MAAKKILLLTGDFAEDYETMVPFQALQMVGHTVHAVCPGKKAGDKVKTAIHDFEGDQTYT 62

Query: 61  EKPGHQFALNASFDEVSAADYDALVVAGGRAPEYLRLNPKVIELVQAFAKADKAIAAVCH 120
           EKPGHQFALNASFD+VSAA YDALVVAGGRAPEYLRLNPKVIELVQAFAKADK IAAVCH
Sbjct: 63  EKPGHQFALNASFDDVSAAGYDALVVAGGRAPEYLRLNPKVIELVQAFAKADKPIAAVCH 122

Query: 121 GPQVLAAAGVLEGKKVSAYPACAPEVKLAGGQFADIAVDAAVTDGKLVTAPAWPAHPAWL 180
           GPQVLAAAGVLEGKKVSAYPACAPEVKLAGGQFADIAVDAA+TDGKLVTAPAWPAHPAWL
Sbjct: 123 GPQVLAAAGVLEGKKVSAYPACAPEVKLAGGQFADIAVDAAITDGKLVTAPAWPAHPAWL 182

Query: 181 AQFLQVLGTRIEL 193
           AQFLQVLGTRIEL
Sbjct: 183 AQFLQVLGTRIEL 195


>gi|300311582|ref|YP_003775674.1| intracellular protease/amidase
           [Herbaspirillum seropedicae SmR1]
          Length = 242

 Score = 79.3 bits (194), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 99/184 (53%), Gaps = 16/184 (8%)

Query: 5   KILLLTGDFAEDYETMVPFQALQMVGHTVHAVCPGKKAGDKIKTAIHDFEGDQTYTEKPG 64
           K+ +L  D  E  E + P +AL+  G TVH +       DK   ++  F+    + +K G
Sbjct: 9   KVAVLVTDGFEQAELLEPKKALEAAGATVHILS------DK-SDSVQGFK----HVDK-G 56

Query: 65  HQFALNASFDEVSAADYDALVVAGGRAP-EYLRLNPKVIELVQAFAKADKAIAAVCHGPQ 123
              +++ S D  SA DY A+++ GG    + +RL P+    V+A   A+K IA++CHG  
Sbjct: 57  EVVSVDGSLDNASADDYSAVLLPGGVVNGDAMRLLPQARNFVRAANDAEKPIASICHGGW 116

Query: 124 VLAAAGVLEGKKVSAYPACAPEVKLAGGQFADIAVDAAVTDGKLVTAPAWPAHPAWLAQF 183
           +L +AG+ +G+ V+++P+   + K AG Q+ D  V   V D   V++      PA+  +F
Sbjct: 117 LLISAGIAKGRTVTSWPSLQDDFKNAGSQWVDQEV---VRDENFVSSRKPADIPAFNNEF 173

Query: 184 LQVL 187
           +++L
Sbjct: 174 MKLL 177


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 542,920
Number of extensions: 19213
Number of successful extensions: 85
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 2
Length of query: 193
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 113
Effective length of database: 1,241,070
Effective search space: 140240910
Effective search space used: 140240910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)