BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3033.p
         (324 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312369|ref|YP_003776461.1| nucleoside-diphosphate-sugar ep...   635   0.0  
gi|300310345|ref|YP_003774437.1| UDP-glucose 4-epimerase [Herbas...   147   9e-37
gi|300313692|ref|YP_003777784.1| UDP-glucose 4-epimerase [Herbas...    55   7e-09

>gi|300312369|ref|YP_003776461.1| nucleoside-diphosphate-sugar
           epimerase [Herbaspirillum seropedicae SmR1]
          Length = 324

 Score =  635 bits (1637), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/324 (95%), Positives = 320/324 (98%)

Query: 1   MHIVITGGAGFLGSRLARQLLQRGSLTGRDGQPQEIKRITLLDVVPAQGFSDPRIEAVTG 60
           MHIVITGGAGFLGSRLARQLLQRG+LTGRDGQPQ IKRITLLDV PAQGF DPRIEAVTG
Sbjct: 1   MHIVITGGAGFLGSRLARQLLQRGTLTGRDGQPQAIKRITLLDVAPAQGFDDPRIEAVTG 60

Query: 61  DIADAAVIERVITPETQSIFHLAAIVSGHAEADFELGMKINFDATRLILERARALGTRPR 120
           DIADAAVIERVIT ETQSIFHLAAIVSGHAEADF+LGMKINFDATR+ILERARALG++PR
Sbjct: 61  DIADAAVIERVITAETQSIFHLAAIVSGHAEADFDLGMKINFDATRVILERARALGSKPR 120

Query: 121 VVFTSSVAVFGGELPAVVPDNTLLMPQSSYGAQKVMGELLVQDYSRKGYIDGRALRMPTI 180
           VVFTSSVAVFGGELPAVVPDNTLLMPQSSYGAQKVMGELLVQDYSRKG+IDGRALRMPTI
Sbjct: 121 VVFTSSVAVFGGELPAVVPDNTLLMPQSSYGAQKVMGELLVQDYSRKGFIDGRALRMPTI 180

Query: 181 SVRPGAPNKAASSFASGIIREPLNGQPALCPVSPDTRMWLMSPRQAIANLIHGHEINGAD 240
           SVRPGAPNKAASSFASGIIREPLNGQP++CPV+PDTRMWLMSPRQAIANLIHGHEINGAD
Sbjct: 181 SVRPGAPNKAASSFASGIIREPLNGQPSVCPVTPDTRMWLMSPRQAIANLIHGHEINGAD 240

Query: 241 LGLARFLSIDGLCVTVKDMVDALEQVAGKEVVQLIEWKEDEAIKRIVNSWPGAFEAKRAK 300
           LGLARFLSIDGLCVTVK+MV+ALEQVAGKEVVQLIEWKEDEAIKRIVNSWPGAFEAKRAK
Sbjct: 241 LGLARFLSIDGLCVTVKEMVEALEQVAGKEVVQLIEWKEDEAIKRIVNSWPGAFEAKRAK 300

Query: 301 ALGFTADANFADIIRAHIEDEVKK 324
           ALGFTADANFADIIRAHIEDEVKK
Sbjct: 301 ALGFTADANFADIIRAHIEDEVKK 324


>gi|300310345|ref|YP_003774437.1| UDP-glucose 4-epimerase
           [Herbaspirillum seropedicae SmR1]
          Length = 320

 Score =  147 bits (372), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 100/321 (31%), Positives = 162/321 (50%), Gaps = 16/321 (4%)

Query: 1   MHIVITGGAGFLGSRLARQLLQRGSLTGRDGQPQEIKRITLLDVVPAQ-GFSDPRIEAVT 59
           M I++TG  GF+G+ L   L QRG   GR        RI+ L V+  Q G + P +  + 
Sbjct: 1   MKILVTGAGGFIGATLVALLRQRGQAGGR--------RISSLAVLDRQLGETAPDMVRIE 52

Query: 60  GDIADAAVIERVITPETQSIFHLAAIVSGHAEADFELGMKINFDATRLILE---RARALG 116
           G++ DA V  +++       FHLAA+  G AEAD  L  ++N DAT  + E   R     
Sbjct: 53  GNLQDAQVQAQIVAFGADLCFHLAALPGGAAEADPALSRRVNLDATLDLFELLARRDPAT 112

Query: 117 TRPRVVFTSSVAVFGGELPAVVPDNTLLMPQSSYGAQKVMGELLVQDYSRKGYIDGRALR 176
             P VV+ S++AV+G +LP  V   T   P   YGA K+  E+L+ DY+R+G +DGR+LR
Sbjct: 113 PPPVVVYASTIAVYGLDLPDPVTPATPPRPALIYGAHKLACEILLADYTRRGLLDGRSLR 172

Query: 177 MPTISVRPGAPNKAASSFASGIIREPLNGQPALCPVSPDTRMWLMSPRQAIANLIHGHEI 236
           +P I  RP A +   S+F S ++     G+   CPV P    W MS ++   NL+H   +
Sbjct: 173 LPGIVARPRAASGLVSAFMSELLHALAAGELFTCPVGPQATAWWMSAQRCAENLLHAASM 232

Query: 237 NGA---DLGLARFLSIDGLCVTVKDMVDALEQVAGKEVVQLIEWKEDEAIKRIVNSWPGA 293
           +     +   AR   +  L +++  +V  L  + G +   L+ +     ++ +   +P  
Sbjct: 233 DPTRDPEGAAARVWPLPVLRLSIAQVVATLSALYGVDGQALVRYAPQPQVEAVFGRYP-R 291

Query: 294 FEAKRAKALGFTADANFADII 314
            + + A+ LG   D +  +++
Sbjct: 292 LDDRAARQLGLRDDGSVQEMV 312


>gi|300313692|ref|YP_003777784.1| UDP-glucose 4-epimerase
           [Herbaspirillum seropedicae SmR1]
          Length = 336

 Score = 55.1 bits (131), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 83/173 (47%), Gaps = 16/173 (9%)

Query: 1   MHIVITGGAGFLGSRLARQLLQRGSL-----TGRDGQPQEIKRITLLDVVPAQGFSDPRI 55
           M+I++TGGAG++GS    +LL+ G          +  P+ +KR+        Q  +   +
Sbjct: 1   MNILVTGGAGYIGSHTCVELLKAGHEVIVFDNFCNSSPESVKRV--------QQITGKTL 52

Query: 56  EAVTGDIADAAVIERVITP-ETQSIFHLAAIVS-GHAEADFELGMKINFDATRLILERAR 113
             V GDI +   +E V+   + +++ H A + + G +     +    N   T  +LE  +
Sbjct: 53  SLVKGDIRNREQLESVLREFKCEAVIHFAGLKAVGESVEQPLMYYDNNVVGTVRLLEAMQ 112

Query: 114 ALGTRPRVVFTSSVAVFGGELPAVVPDNTLLMPQSSYGAQKVMGELLVQDYSR 166
           A G +  +VF+SS  V+G      + +   L   + YG  K++ E +++DY R
Sbjct: 113 ATGVK-TIVFSSSATVYGDPQYLPLDEAHPLSASNPYGRSKIVIEDMLRDYYR 164


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,082,681
Number of extensions: 46630
Number of successful extensions: 171
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 3
Length of query: 324
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 239
Effective length of database: 1,217,395
Effective search space: 290957405
Effective search space used: 290957405
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)