BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3030.p
         (397 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312366|ref|YP_003776458.1| hypothetical protein Hsero_3062...   661   0.0  

>gi|300312366|ref|YP_003776458.1| hypothetical protein Hsero_3062
           [Herbaspirillum seropedicae SmR1]
          Length = 389

 Score =  661 bits (1705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/388 (80%), Positives = 343/388 (88%)

Query: 1   MSSHPNPLHSLDLFCKVVDNYGDIGICWRLARQLAQEHKLAVRLWVDDLVSFQRIWPQVD 60
           MSS  +P  SLDLFCKVVDNYGDIGICWRLARQLA+EH +AVRLWVDDLVSF RIWP VD
Sbjct: 1   MSSPASPFRSLDLFCKVVDNYGDIGICWRLARQLAREHGIAVRLWVDDLVSFARIWPSVD 60

Query: 61  VQAETQQLAGVTVQHWRSQEGSYTTADVADLVVEFFGCEIPPGYVEAMAQRPIKPVWFNL 120
            QA TQQ  GVTVQHWR Q+  Y  +D+ D+V+EFFGCE+PP YVEAMAQRP+KP+WFNL
Sbjct: 61  TQALTQQREGVTVQHWRGQDDHYEASDIPDVVIEFFGCELPPAYVEAMAQRPLKPLWFNL 120

Query: 121 EGLSAEAWVEGCHTLPSPHRSLKLTKYFFFPGFNERTGGLSFEADLEAQRHAFLAAEQGP 180
           EGLSAE WVEGCHTLPSPHRSLKLTKYFFFPGFNERTGGLSFEADLEAQR AFLA+ QG 
Sbjct: 121 EGLSAEPWVEGCHTLPSPHRSLKLTKYFFFPGFNERTGGLSFEADLEAQRQAFLASGQGA 180

Query: 181 AFLARLGVTPDEMAGCKVSLFCYDHAPIAELFAAWQASPLPVTCLVPEGVGRAQIEAFLG 240
           AFLA LGVT  E  GCKVSLFCYD+APIAELFA+WQA+P PVTCLVPEGVGRA +EAFLG
Sbjct: 181 AFLAGLGVTAQEAQGCKVSLFCYDYAPIAELFASWQAAPAPVTCLVPEGVGRAAVEAFLG 240

Query: 241 APMRAGTAATRAALTVRILPFVPQTDYDKLLWSCDLNFVRGEDSFVRAQWAGKPFIWNIY 300
           APM AGTAATR  L+VR+LPFVPQTDYD+LLWSCDLNFVRGEDSFVRAQWAGKPF+WNIY
Sbjct: 241 APMMAGTAATRGQLSVRVLPFVPQTDYDRLLWSCDLNFVRGEDSFVRAQWAGKPFVWNIY 300

Query: 301 YQDKNLHHTKLNAFLKIYDPATPALVDLNRAWNGAYPGEPDWHATWQTLRAQLPALNGQA 360
           +QDKNLHHTKLNAFLKIYDPA+ A+ DLNRAWNGAYPGE DW A WQ L+ +LPAL   A
Sbjct: 301 HQDKNLHHTKLNAFLKIYDPASAAVADLNRAWNGAYPGELDWRANWQDLQGELPALTQAA 360

Query: 361 EQWLQKMLANGDWMDNLLGFAARLVAED 388
           ++WL KMLANGD+MDNLL FAARL+ E+
Sbjct: 361 DRWLHKMLANGDFMDNLLRFAARLLVEE 388


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.450 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,378,423
Number of extensions: 58990
Number of successful extensions: 127
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 310
Effective length of database: 1,207,925
Effective search space: 374456750
Effective search space used: 374456750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)