BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3025.p
         (379 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312362|ref|YP_003776454.1| cytochrome bd-type quinol oxida...   692   0.0  

>gi|300312362|ref|YP_003776454.1| cytochrome bd-type quinol oxidase
           subunit 2 [Herbaspirillum seropedicae SmR1]
          Length = 379

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/379 (94%), Positives = 371/379 (97%)

Query: 1   MIFDYETLKLIWWAFVGVLIIGFALTDGFDFGVGIMLPFAAKDDTERRILINSIGPTWEG 60
           MIFDYETLKLIWWAFVGVLIIGFALTDGFDFGVG+MLPFA K+DTERRILIN+IGPTWEG
Sbjct: 1   MIFDYETLKLIWWAFVGVLIIGFALTDGFDFGVGMMLPFAGKNDTERRILINAIGPTWEG 60

Query: 61  NQTWLITAGGATFAAWPLVYATAFSGFYIALMVLLFSLFFRPVGFDYRSKVADPRWRNAW 120
           NQTW ITAGGATFAAWPLVYATAFSGFYIALMVLLFSLFFRPVGFDYRSKVADPRWRNAW
Sbjct: 61  NQTWFITAGGATFAAWPLVYATAFSGFYIALMVLLFSLFFRPVGFDYRSKVADPRWRNAW 120

Query: 121 DWGLFIGGFVPPLICGVAFGNLLLGVPFHYDDSMRVEYTGSFFALLNPFGLLAGLLSVAM 180
           DWGLFIGGFVPPLICGVAFGNLLLGVPFHYDD+MRVEYTGSFFALLNPFGLLAGLLSVAM
Sbjct: 121 DWGLFIGGFVPPLICGVAFGNLLLGVPFHYDDTMRVEYTGSFFALLNPFGLLAGLLSVAM 180

Query: 181 LLMHGAAFAFVKTDAAIGERSRKTVIGAALVTVLLFVIGGFWVAHLPGYRITSMPDANSA 240
           LLMHGAAFAFVKT+AA+ ERSRKT+IGAALVTVLLF+ GGFWVA +PGYRI SMPDANSA
Sbjct: 181 LLMHGAAFAFVKTEAAVAERSRKTIIGAALVTVLLFIAGGFWVAQMPGYRIVSMPDANSA 240

Query: 241 FTPLAKTVEVVTGAWFDNYAKWPVTKLFPALGVAGAVLAALLALVRSARLAFIASGLSVT 300
           FTPLAKTVEVV GAWFDNYAKWPVTKLFPALGVAGAVLAALLALVRSARLAFIAS LSVT
Sbjct: 241 FTPLAKTVEVVAGAWFDNYAKWPVTKLFPALGVAGAVLAALLALVRSARLAFIASALSVT 300

Query: 301 GIILTAGMSLFPFVMPSSLDAKSSLTMWDAVSSHKTLGLMFWMVLIFLPLILIYTGWVYR 360
           GIILTAGMSLFPFVMPSSLDAKSSLT+WD+VSSHKTLGLMFWMVLIFLPLI++YTGWVYR
Sbjct: 301 GIILTAGMSLFPFVMPSSLDAKSSLTLWDSVSSHKTLGLMFWMVLIFLPLIIVYTGWVYR 360

Query: 361 VVKGKVTARDIHENEHTAY 379
           VVKGKVTARDIHENEHTAY
Sbjct: 361 VVKGKVTARDIHENEHTAY 379


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.142    0.461 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,109,933
Number of extensions: 43305
Number of successful extensions: 205
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 292
Effective length of database: 1,207,925
Effective search space: 352714100
Effective search space used: 352714100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 131 (55.1 bits)