BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3024.p
         (540 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312361|ref|YP_003776453.1| cytochrome bd-type quinol oxida...  1048   0.0  

>gi|300312361|ref|YP_003776453.1| cytochrome bd-type quinol oxidase
           subunit 1 [Herbaspirillum seropedicae SmR1]
          Length = 541

 Score = 1048 bits (2710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 511/540 (94%), Positives = 532/540 (98%)

Query: 1   MVPIDEVVSLSRLQFAVTALYHFLFVPLTLGLSWILVIMESVYVMTGNQIYKDMTRFWGK 60
           MVPIDEVVSLSRLQFAVTALYHFLFVPLTLGLSWILVIMESVYVMTGNQIYKDMTRFWGK
Sbjct: 1   MVPIDEVVSLSRLQFAVTALYHFLFVPLTLGLSWILVIMESVYVMTGNQIYKDMTRFWGK 60

Query: 61  LFGINFAMGVATGITLEFQFGTNWSYYSHYVGDIFGTPLAIEGLMAFFMESTFVGLFFFG 120
           LFGINFAMGVATGITLEFQFGTNWSYYSHYVGDIFGTPLAIEGLMAFF+ESTFVGLFFFG
Sbjct: 61  LFGINFAMGVATGITLEFQFGTNWSYYSHYVGDIFGTPLAIEGLMAFFLESTFVGLFFFG 120

Query: 121 WDKLSRKQHLIVTVLVAVGSNLSALWILIANGWMNNPVGAEFNFETMRMELVSMTDVIFN 180
           WDKLSRKQHLIVTVLVA+GSNLSALWILIANGWMNNPVGAEFNFETMRMELVSMTDVIFN
Sbjct: 121 WDKLSRKQHLIVTVLVALGSNLSALWILIANGWMNNPVGAEFNFETMRMELVSMTDVIFN 180

Query: 181 PVAQVKFVHTVAAGYVTASMFVLGISAWYLLKARDTAFALRSFAVAAGFGLAATLSVIVL 240
           PVAQVKFVHTVAAGYVTASMFVLG+SAWYLLKARDTAFALRSFAVAAGFGLAATLSVIVL
Sbjct: 181 PVAQVKFVHTVAAGYVTASMFVLGVSAWYLLKARDTAFALRSFAVAAGFGLAATLSVIVL 240

Query: 241 GDESGYTAGEVNKVKLAAIEAEWDTHPAPAGLTLFGLPNEKEQRTDYAVKIPYVLGLIGT 300
           GDESGYTAGEVNKVKLAAIEAEWDTHPAPAGLTLFGLPN+KE+RTDYAVKIPYVLGLI T
Sbjct: 241 GDESGYTAGEVNKVKLAAIEAEWDTHPAPAGLTLFGLPNDKEERTDYAVKIPYVLGLIAT 300

Query: 301 RSVDTQVLGIKDLKKENEVRIRNGMLAYAALTKLKSGDKSPEARADFNKLKKDLGYGLLL 360
           RS DTQVLGIKDLKKE+E RIRNGMLAYAALTKLKSGDKSPEARA+F+KLKKDLGYGLLL
Sbjct: 301 RSADTQVLGIKDLKKEHEARIRNGMLAYAALTKLKSGDKSPEARAEFDKLKKDLGYGLLL 360

Query: 361 KKYTNNVVDATPEQIALAVDDTIPKVAPMFWSFRGMVGLGFLFLFIFAASFWFLAKKQLA 420
           KKYTN VVDATPEQI++AV+DTIPKVAP+FWSFRGMV LGFLFLFIF+ASFWFLAKKQLA
Sbjct: 361 KKYTNKVVDATPEQISMAVNDTIPKVAPLFWSFRGMVALGFLFLFIFSASFWFLAKKQLA 420

Query: 421 PQRWLLRLAVIAIPLPWIAAELGWVVAEYGRQPWTIAGILPTHLSASSLQPGSLYFSLAG 480
           PQRWLLRLAVI+IPLPWIAAELGW+VAEYGRQPWTIAGILPTHLSASSLQPGSLYFSLAG
Sbjct: 421 PQRWLLRLAVISIPLPWIAAELGWIVAEYGRQPWTIAGILPTHLSASSLQPGSLYFSLAG 480

Query: 481 FILFYTFLLVVEMILMVKYARLGPSSLHTGKYYWESKNQDSGPDDVLPPPLNPAANIGSH 540
           FILFYTFLLVVEMILMVKYARLGPSSLHTG+YYWE+K ++SGP DVLPPPLNP+AN G+H
Sbjct: 481 FILFYTFLLVVEMILMVKYARLGPSSLHTGQYYWENKGKESGPGDVLPPPLNPSANAGNH 540


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.139    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,622,739
Number of extensions: 65087
Number of successful extensions: 270
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 270
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 450
Effective length of database: 1,193,720
Effective search space: 537174000
Effective search space used: 537174000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 133 (55.8 bits)