BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3019.p
         (322 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312355|ref|YP_003776447.1| sulfite oxidase [Herbaspirillum...   615   e-177
gi|300310652|ref|YP_003774744.1| oxidoreductase, molybdopterin-b...    82   7e-17

>gi|300312355|ref|YP_003776447.1| sulfite oxidase [Herbaspirillum
           seropedicae SmR1]
          Length = 322

 Score =  615 bits (1587), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 307/322 (95%), Positives = 315/322 (97%)

Query: 1   MLIKIRPDQIEIPTASEITPKDLYLSRRSFMARMAAGSALATGMGALPQAFAQQGRKLPA 60
           MLIKIRPDQIEIPTASEITPKD+YLSRRSFMAR+AAG+ALA GMGALPQAFAQQGRKLPA
Sbjct: 1   MLIKIRPDQIEIPTASEITPKDVYLSRRSFMARVAAGAALAGGMGALPQAFAQQGRKLPA 60

Query: 61  KLNNAYAVMDKQTAYKDATSYNNFYEFGTDKADPAKNAGTLKTSPWTIAIEGEVNKPMTL 120
           KLNNAYAVMDKQTAYKDATSYNNFYEFGTDKADPAKNAGTLKTSPWTI IEGEV KP TL
Sbjct: 61  KLNNAYAVMDKQTAYKDATSYNNFYEFGTDKADPAKNAGTLKTSPWTIDIEGEVKKPFTL 120

Query: 121 DLDALTKLAPLEERIYRLRCVEGWSMVIPWIGYSLSALIRKVEPTGNARYVEFVTLADKK 180
           DLDALTKLAPLEERIYRLRCVEGWSMVIPWIGYSLSALI+K EPTGNA+YVEFVTLADKK
Sbjct: 121 DLDALTKLAPLEERIYRLRCVEGWSMVIPWIGYSLSALIKKAEPTGNAKYVEFVTLADKK 180

Query: 181 QMPGLSDPILNWPYREGLRMDEANHPLTLLTLGMYGEVLPNQNGAPVRIVVPWKYGFKSA 240
           QMPGLSDPILNWPYREGLR+DEANHPLTLLTLGMYGEVLPNQNGAPVRI+VPWKYGFKSA
Sbjct: 181 QMPGLSDPILNWPYREGLRLDEANHPLTLLTLGMYGEVLPNQNGAPVRIIVPWKYGFKSA 240

Query: 241 KSIVKIRFVKDEPKTAWNLYAPQEYGFYSNVNPTVDHPRWSQATERRIGEDGFFAPKRKT 300
           KSIVKIRFVKDEPKTAWNLYAPQEYGFYSNVNP VDHPRWSQATERRIGEDGFFAPKRKT
Sbjct: 241 KSIVKIRFVKDEPKTAWNLYAPQEYGFYSNVNPGVDHPRWSQATERRIGEDGFFAPKRKT 300

Query: 301 LMFNGYNEVASLYTGMDLRKFY 322
           LMFNGYNEVA LYTGMDLRKF+
Sbjct: 301 LMFNGYNEVAGLYTGMDLRKFF 322


>gi|300310652|ref|YP_003774744.1| oxidoreductase,
           molybdopterin-binding protein [Herbaspirillum
           seropedicae SmR1]
          Length = 258

 Score = 81.6 bits (200), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 84/192 (43%), Gaps = 29/192 (15%)

Query: 81  YNNFY-EFGTDKADPAKNAGTLKTSPWTIAIEGEVNKPMTLDLDALTKLAPLEERIYRLR 139
           +N FY EF         NA  +  S W + + G V+   +  L+ L  L P   +I R  
Sbjct: 95  FNAFYDEF---------NAPDIDGSDWKLEVSGLVSDKRSWTLERLRAL-PQAGQITRHI 144

Query: 140 CVEGWSMVIPWIGYSLSALIRKVEPTGNARYVEFVTLADKKQMPGLSDPILNWPYREGLR 199
           C+EGWS +  W G  L   ++ V     ARYV F   AD+              Y   L 
Sbjct: 145 CIEGWSAIGQWSGVPLRLFLQAVGADLTARYVGF-KCADR--------------YYSSLD 189

Query: 200 MDEANHPLTLLTLGMYGEVLPNQNGAPVRIVVPWKYGFKSAKSIVKIRFVKDEPKTAWNL 259
           M  A HP T+L L    E LP Q G P+++ VP K GFK+ K +V I      P   W  
Sbjct: 190 MPTALHPQTILALDFGKEALPTQYGYPLKVRVPTKLGFKNPKHVVAIFVSNQNPGGYWE- 248

Query: 260 YAPQEYGFYSNV 271
              Q Y ++S +
Sbjct: 249 --DQGYNWFSGI 258


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.135    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,052,646
Number of extensions: 45305
Number of successful extensions: 105
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 2
Length of query: 322
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 237
Effective length of database: 1,217,395
Effective search space: 288522615
Effective search space used: 288522615
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)