BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3018.p
         (223 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312354|ref|YP_003776446.1| sulfite oxidase transmembrane s...   378   e-106

>gi|300312354|ref|YP_003776446.1| sulfite oxidase transmembrane
           subunit YedZ protein [Herbaspirillum seropedicae SmR1]
          Length = 212

 Score =  378 bits (971), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 189/208 (90%), Positives = 201/208 (96%)

Query: 3   LPLAPAALRNLKPRSVTVLWWCFLALAFVPLVRLVVLGFTGGLGANPLEFITHSTGDWTL 62
           + LAPAAL NLKPR+VT LWW FLALA +PL+RLV+LGFTGGLGANPLEFITHSTGDWTL
Sbjct: 1   MQLAPAALHNLKPRTVTGLWWLFLALACLPLLRLVILGFTGGLGANPLEFITHSTGDWTL 60

Query: 63  YLFCITLAVTPLRKLTGLNWLVRMRRMVGLMAFFYLCLHFTTFVWFDHFFDLGEIWKDIL 122
           YLFC+TLAVTPLRKLTGLNWLVRMRRM+GLMAFFYLCLHFTTFVWFDHFFDLGEIWKDIL
Sbjct: 61  YLFCLTLAVTPLRKLTGLNWLVRMRRMLGLMAFFYLCLHFTTFVWFDHFFDLGEIWKDIL 120

Query: 123 KRPFITVGVLALVLSIPLAITSTNGMVRRLGGKRWQVLHRLVYVIVPLGVLHYWWDKAGK 182
           KRPFITVGV+AL+LSIPLA+TSTNGMVRRLGGKRWQ LHRLVY+IVPLGVLHYWWDKAGK
Sbjct: 121 KRPFITVGVIALLLSIPLALTSTNGMVRRLGGKRWQALHRLVYLIVPLGVLHYWWDKAGK 180

Query: 183 NLIAQPLLFAVLVGLMLALRLLWRKGRA 210
           NLIAQPLLFAVLVGLML LRL+WRKGRA
Sbjct: 181 NLIAQPLLFAVLVGLMLVLRLVWRKGRA 208


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.333    0.146    0.499 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 643,282
Number of extensions: 27287
Number of successful extensions: 102
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 1
Length of query: 223
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 141
Effective length of database: 1,231,600
Effective search space: 173655600
Effective search space used: 173655600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 129 (54.3 bits)