BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3017.p
         (229 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312353|ref|YP_003776445.1| peptide methionine sulfoxide re...   371   e-104
gi|300310015|ref|YP_003774107.1| peptide methionine sulfoxide re...   167   5e-43

>gi|300312353|ref|YP_003776445.1| peptide methionine sulfoxide
           reductase [Herbaspirillum seropedicae SmR1]
          Length = 229

 Score =  371 bits (953), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 187/229 (81%), Positives = 206/229 (89%)

Query: 1   MSLFKPAALCLVLAAAIQPSAYAAEAAVAVPAPSGKAVLDSTAPTATVVLAGGCFWGVQG 60
           MS FKPA L L LA +   +A+AAE AVAVPAP GKA+L ++APT T+VLAGGCFWGVQG
Sbjct: 1   MSRFKPAVLALCLALSTLAAAHAAERAVAVPAPVGKALLAASAPTETLVLAGGCFWGVQG 60

Query: 61  VFQHTQGVLQAVSGYAGGKADTASYSQVSAGTTGHAEAVQVTYDPRKISYGQILQIYFSV 120
           VFQHTQGVL+AVSGYAGGKADTA+Y+ VS+G+TGHAEAVQVTYDPRKIS+GQ+LQIYFSV
Sbjct: 61  VFQHTQGVLKAVSGYAGGKADTATYAMVSSGSTGHAEAVQVTYDPRKISFGQLLQIYFSV 120

Query: 121 AHDPTQLNRQGPDQGTQYRSAIFTASAQQQQATLAYIAQLNAAKVFAAPIVTTVAPLQAF 180
           AHDPTQLNRQGPDQGTQYRSAIFTA+ QQ++A  AYIAQLNAAKV+ APIVT V  LQ F
Sbjct: 121 AHDPTQLNRQGPDQGTQYRSAIFTANEQQKEAAQAYIAQLNAAKVYGAPIVTQVTALQGF 180

Query: 181 YRAEDYHQDYATLHPNQPYIAYNDLPKISNLQKMYPAIYRADPVLVFKR 229
           Y AEDYHQDYATLHPNQPYIAYNDLPKI NLQKMYPA+YRADPVLVFKR
Sbjct: 181 YAAEDYHQDYATLHPNQPYIAYNDLPKIGNLQKMYPALYRADPVLVFKR 229


>gi|300310015|ref|YP_003774107.1| peptide methionine sulfoxide
           reductase MsrA protein [Herbaspirillum seropedicae SmR1]
          Length = 183

 Score =  167 bits (424), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 81/167 (48%), Positives = 111/167 (66%), Gaps = 3/167 (1%)

Query: 49  VLAGGCFWGVQGVFQHTQGVLQAVSGYAGGKADTASYSQVSAGTTGHAEAVQVTYDPRKI 108
           VL GGCFW ++ V+Q  +GV    SGY GG     SY QV  G TGHAE V++ +DP++I
Sbjct: 13  VLGGGCFWCLEAVYQQVRGVESVESGYTGGSVVNPSYEQVCGGQTGHAEVVKLAFDPQQI 72

Query: 109 SYGQILQIYFSVAHDPTQLNRQGPDQGTQYRSAIFTASAQQQQATLAYIAQLNAAKVFAA 168
           SY ++L+I+F++ HDPT LNRQG D GTQYRS I+     Q       IA++  A V+ A
Sbjct: 73  SYRELLEIFFTI-HDPTTLNRQGNDVGTQYRSVIYYQDEAQHDTARHIIAEM--ALVWDA 129

Query: 169 PIVTTVAPLQAFYRAEDYHQDYATLHPNQPYIAYNDLPKISNLQKMY 215
           PIVT ++P Q +YRAEDYHQ+Y   HP Q Y A+   PK++ L++++
Sbjct: 130 PIVTELSPPQPYYRAEDYHQNYFVQHPFQGYCAFVVAPKVAKLREVF 176


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.130    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 638,840
Number of extensions: 22152
Number of successful extensions: 90
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 2
Length of query: 229
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 147
Effective length of database: 1,231,600
Effective search space: 181045200
Effective search space used: 181045200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)