BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3015.p
         (437 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312351|ref|YP_003776443.1| outer membrane efflux protein [...   647   0.0  

>gi|300312351|ref|YP_003776443.1| outer membrane efflux protein
           [Herbaspirillum seropedicae SmR1]
          Length = 441

 Score =  647 bits (1670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/397 (80%), Positives = 362/397 (91%)

Query: 41  SITLGQLVQQAAFNNPAALARQRAVEAAAESVSSARWQFFPTPSMSVERAGLTSSRDVSY 100
           ++TLG+LV+QAAFNNPAAL+RQRAVE+A ESVSSARWQFFP PS+SVERA   +SRDVSY
Sbjct: 45  AVTLGELVKQAAFNNPAALSRQRAVESAGESVSSARWQFFPNPSISVERASSRNSRDVSY 104

Query: 101 QGDDTVITLRLQQTLWSGGRLSAQLEQAGHNQQSAEEALREQRFRLAEQVISQYSLWVRS 160
            GD +V+TLRLQQTLW+GGRL+AQLEQA HNQ SAEEALREQR RLAEQVISQYS+WVRS
Sbjct: 105 GGDSSVVTLRLQQTLWAGGRLTAQLEQAEHNQASAEEALREQRLRLAEQVISQYSMWVRS 164

Query: 161 DLATEANQKNLKALEDFLAQSQRREKEGAAARVDVTLVRGRRDQALTDLLGAKASRQSAR 220
           DLA  AN KNL+ LE FL QS RRE+EGAAARVDVTLVRGRRDQALTDLLGAKA R SAR
Sbjct: 165 DLAASANDKNLQELEKFLEQSVRREREGAAARVDVTLVRGRRDQALTDLLGAKAGRSSAR 224

Query: 221 LQLEQLVGLNLSDDELRADVVKMSVTDDLPLLTENMLQSSPLLKRLRADAKVQESAIKIR 280
           LQLEQLVG+ L+D+E+RADV KM V+DDLP LTE+ L SSPL+KRLRADA+VQESAIKIR
Sbjct: 225 LQLEQLVGMPLTDEEIRADVAKMEVSDDLPTLTESTLGSSPLIKRLRADAQVQESAIKIR 284

Query: 281 SASYWPEVYARVEHQRGNFSVRNQPDVNRAFIGMQMQLGAGLSLGSEVAAAQGRYQSAVL 340
            ASYWPEVYAR+EHQRGN+SV NQP  NRAFIGMQMQLGAGLSLGSEVAAA+GRY++A+L
Sbjct: 285 QASYWPEVYARLEHQRGNYSVPNQPSNNRAFIGMQMQLGAGLSLGSEVAAARGRYEAALL 344

Query: 341 AVDAARLELISQMAATFTEYQQSEARARNLVDVGLSAEDVLASYTRQYLSGRRSWLDVMN 400
           AVDAARLEL+SQ+ + +TEYQQ+ AR+RNL +V LSA++VL+SYTRQYLSGRRSWLDVMN
Sbjct: 345 AVDAARLELVSQVGSIYTEYQQALARSRNLEEVALSADEVLSSYTRQYLSGRRSWLDVMN 404

Query: 401 AVREVVQADLQKADVSAMIIANGRKLQLWAYGLDQVR 437
           AVREVVQADLQ+ADV+AMIIANG KL+LWAYGLD+VR
Sbjct: 405 AVREVVQADLQRADVTAMIIANGHKLRLWAYGLDEVR 441


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.128    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,105,195
Number of extensions: 39525
Number of successful extensions: 215
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 218
Number of HSP's successfully gapped: 4
Length of query: 437
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 349
Effective length of database: 1,203,190
Effective search space: 419913310
Effective search space used: 419913310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)