BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3013.p (702 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312350|ref|YP_003776442.1| bacteriocin/lantibiotic exporte... 1194 0.0 gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclol... 208 9e-55 gi|300311132|ref|YP_003775224.1| ABC-type bacteriocin/lantibioti... 193 5e-50 gi|300312861|ref|YP_003776953.1| multidrug ABC transporter ATPas... 132 1e-31 gi|300314059|ref|YP_003778151.1| multidrug ABC transporter ATPas... 129 7e-31 >gi|300312350|ref|YP_003776442.1| bacteriocin/lantibiotic exporter/double-glycine peptidase domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 730 Score = 1194 bits (3089), Expect = 0.0, Method: Compositional matrix adjust. Identities = 584/689 (84%), Positives = 640/689 (92%), Gaps = 2/689 (0%) Query: 1 MSELASSLSWAVMTAARRQGVVIDSVRLDAAIATAMGKNGSAAVDLQVLCTALSLPKAQQ 60 MSE+++SLSWA+ AARRQGVVID+ RL AIA A+GK GS D+ LC AL+L + + Sbjct: 33 MSEISTSLSWALTMAARRQGVVIDTQRLGTAIAAAVGKGGSP--DIPKLCRALNLSRPRH 90 Query: 61 SDIPERAQLPMLGVVNERGWGIIVDQRPDGRWIFISEEGHALISDSDLIDGAYRLDFAAL 120 P+R LP+L V E+GWG++VDQRPDGRW F+ G +++ D++++ G YRLDF Sbjct: 91 LAKPDRPSLPLLCQVKEQGWGLLVDQRPDGRWDFLCHTGQSVVGDAEIVGGGYRLDFTEQ 150 Query: 121 GAKDGQNGFERVFKEALAEFRPIILEVVIASVVMSIIALGASIFSMQVYDRVIPTHGVAT 180 G K GQ GFERVF +A+ EFRP+++E+V+ASVVMSIIALGASIFSMQVYDRVIPTHGVAT Sbjct: 151 GGKKGQQGFERVFLDAIGEFRPVLIEIVVASVVMSIIALGASIFSMQVYDRVIPTHGVAT 210 Query: 181 LIVLAIGVSLAILFELGMKFARSHIMDNVVSGLDAKLSQALFERLLSVRVDQLPGSVGSL 240 LIVLAIGV LAILFELGMKFARSHIMD VVSGLDAKLSQAL+ERLL+VRVDQLPGSVGSL Sbjct: 211 LIVLAIGVGLAILFELGMKFARSHIMDKVVSGLDAKLSQALYERLLAVRVDQLPGSVGSL 270 Query: 241 AGQLRGYEQIRSFYTSQTLFTLVDLPLGLLFVLVIAFIASPWMAMVPTLFGLAAIAIGYL 300 AGQLRGYEQIRSFYTSQTLFTLVDLPLGLLFVLVIA IASPWMA+VPT+FG+ AI IGYL Sbjct: 271 AGQLRGYEQIRSFYTSQTLFTLVDLPLGLLFVLVIALIASPWMALVPTVFGVVAILIGYL 330 Query: 301 SNRKVVRLADKSAAASNLKTGLLVETVEGVETIKSGSGGWKFLSRWIDVSAESIRSDMAM 360 SNRKV RLADKSAAASNLKTGLLVETVEGVETIKSGSGGWKFLSRWIDVSAESIRSDMAM Sbjct: 331 SNRKVARLADKSAAASNLKTGLLVETVEGVETIKSGSGGWKFLSRWIDVSAESIRSDMAM 390 Query: 361 RAIGDHAGYIAAMLQQLSYSTTVIVGSFLVINGQITMGALIACSILGGRILAPVAMIPGL 420 RAIGDHAGYIAA LQQLSYSTTVI+G+FLVINGQITMGALIACSILGGRILAPVAMIPGL Sbjct: 391 RAIGDHAGYIAATLQQLSYSTTVIIGAFLVINGQITMGALIACSILGGRILAPVAMIPGL 450 Query: 421 MVQRAHTKATLAGLEKIYALQTDQGSDRQLTPDSLRGEFRVEEAKFTYAGSLLNAMTIDQ 480 MVQRAHTKATLAGLEKIYALQTDQGS+RQLTPD+LRGEFR+EEAKFTYAGS+LNAMTIDQ Sbjct: 451 MVQRAHTKATLAGLEKIYALQTDQGSERQLTPDNLRGEFRIEEAKFTYAGSMLNAMTIDQ 510 Query: 481 LTIKAGERVAILGPIGAGKSTILRLLSGLYRPQQGRILLDGLDLSNINRLTLNQHIGYLQ 540 LTI AGERVA+LGPIGAGKSTILRLLSGLYRPQQGRILLDGLD++NINRLTLNQHIGYLQ Sbjct: 511 LTINAGERVAVLGPIGAGKSTILRLLSGLYRPQQGRILLDGLDMANINRLTLNQHIGYLQ 570 Query: 541 QDHRLFVGTLRENLLIGLPDPGDEVLRQVMERTGLLRLVSAHPKGLDLPIQEGGRGLSGG 600 QDHRLFVG+LRENLLIGLPDPGD+VLRQVMERTGLLRLVS+HPKGLDLPIQEGGRGLSGG Sbjct: 571 QDHRLFVGSLRENLLIGLPDPGDDVLRQVMERTGLLRLVSSHPKGLDLPIQEGGRGLSGG 630 Query: 601 QRQLVAFTRLLLCRPDIFLLDEPTASMDEDLERHCLNVLNEEINGGRTLVVVTHKPAFLP 660 Q+QLVAFTRLLLC+P++FLLDEPTASMDEDLERHCLNVLN+EI+GGRTLVVVTHKPAFLP Sbjct: 631 QKQLVAFTRLLLCQPNVFLLDEPTASMDEDLERHCLNVLNQEISGGRTLVVVTHKPAFLP 690 Query: 661 MVERVIVVVGNRIVLDGPRDAVLARLRGE 689 MV+RVIVVVGNRIVLDGPRD +LARLRG+ Sbjct: 691 MVDRVIVVVGNRIVLDGPRDVILARLRGQ 719 >gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclolysin-type) secretion ABC transporter protein [Herbaspirillum seropedicae SmR1] Length = 726 Score = 208 bits (530), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 175/650 (26%), Positives = 320/650 (49%), Gaps = 40/650 (6%) Query: 59 QQSDIPERAQLPMLGVVNERGWGIIVD------QRPDGRWIFISEEGHA--LISDSD--- 107 QQ + ER LP +G+ + ++ + G+ I + + G A ++S D Sbjct: 66 QQRERLERTPLPAIGIDRNGRFFVLAKVEQAQGESAHGQRILVQQPGQAPQVLSQRDFEA 125 Query: 108 LIDGAYRLDFAALGAKDGQNGFE-RVFKEALAEFRPIILEVVIASVVMSIIALGASIFSM 166 L G L + + F+ F A+ ++R + EV++ S+V+ +I L +F Sbjct: 126 LWSGQVILFTSKASYAQESSRFDFSWFIPAVVKYRKTLAEVLLISLVLQLIGLITPMFFQ 185 Query: 167 QVYDRVIPTHGVATLIVLAIGVSLAILFELGMKFARSHIMDNVVSGLDAKLSQALFERLL 226 V D+V+ H + TL V+A+G+ A +FE + R+ I N S +D +L LF LL Sbjct: 186 VVMDKVLVNHAMMTLNVIAVGLIAATVFEAVLTGIRTAIFANASSKIDVELGSRLFSHLL 245 Query: 227 SVRVDQLP-GSVGSLAGQLRGYEQIRSFYTSQTLFTLVDLPLGLLFVLVIAFIASPWMAM 285 S+ + G ++R E IRSF T + ++D+ +F+ V+ W ++ Sbjct: 246 SLPLSYFQVRRAGDSIARVRELENIRSFLTGNAMTLVLDIMFSFVFLGVML-----WYSV 300 Query: 286 VPTLFGLAAIAIGYLSNRKVV-----RLADK-SAAASNLKTGLLVETVEGVETIKSGSGG 339 +L LA+I + L + RL DK + +A N LVET+ G++T+K+ + Sbjct: 301 SLSLIVLASIPVYVLLSLVFTPLLRERLNDKFNKSAEN--QSFLVETLTGMDTVKAMAVE 358 Query: 340 WKFLSRWIDVSAESIRSDMAMRAIGDHAGYIAAMLQQLSYSTTVIVGSFLVINGQITMGA 399 ++ +W A + + + I A ++ +L + +G+ LV+ ++++G Sbjct: 359 PRWQQKWDKQLAAYVAAGLTTTNISLLASGAVGLVSKLVTVGIMWLGALLVVKNEMSVGE 418 Query: 400 LIACSILGGRILAPVAMIPGLMVQRAHTKATLAGLEKIYALQTDQGSDRQLTPDSLRGEF 459 L+A ++L G++ +P+ + L +++ L + +T+ +R P + G Sbjct: 419 LVAFNMLAGQVASPILRLAQLWNDFQQIGISMSRLADVLDARTEVAGNRTRLP-RVNGAI 477 Query: 460 RVEEAKFTYAGSLLNAMTIDQLTIKAGERVAILGPIGAGKSTILRLLSGLYRPQQGRILL 519 + F Y + L I+ GE + I+G G+GKST+ +L+ LY + GRI + Sbjct: 478 SFDLVSFRYRPETPEVIRGLSLQIRPGEVIGIVGRSGSGKSTLAKLVQRLYICETGRISV 537 Query: 520 DGLDLSNINRLTLNQHIGYLQQDHRLFVGTLRENLLIGLPDPGDEVLRQVMERTGLLRLV 579 DG D++ I+ +L Q IG + Q++ LF ++R+N I L DP + Q++E +L Sbjct: 538 DGQDIAIIDTASLRQQIGVVLQENTLFSRSIRDN--IALADPSTPI-EQIIEAA---KLA 591 Query: 580 SAH------PKGLDLPIQEGGRGLSGGQRQLVAFTRLLLCRPDIFLLDEPTASMDEDLER 633 AH P+G D + E G GLSGGQRQ +A R L+ P I + DE T+++D + E+ Sbjct: 592 GAHDFICELPEGYDTMVGEQGSGLSGGQRQRIAIARALITNPGILIFDEATSALDYESEK 651 Query: 634 HCLNVLNEEINGGRTLVVVTHKPAFLPMVERVIVVVGNRIVLDGPRDAVL 683 + + +I GRT++++ H+ + + +R+IV+ R+ G D ++ Sbjct: 652 IIQDNM-RQICAGRTVLIIAHRLSAVRDADRIIVMERGRVAESGSHDELI 700 >gi|300311132|ref|YP_003775224.1| ABC-type bacteriocin/lantibiotic ATPase/permease fusion exporter protein [Herbaspirillum seropedicae SmR1] Length = 567 Score = 193 bits (490), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 164/543 (30%), Positives = 281/543 (51%), Gaps = 14/543 (2%) Query: 144 ILEVVIASVVMSIIALGASIFSMQVYDRVIPTHGVATLIVLAIGVSLAILFELGMKFARS 203 +E+++A +V++++ L ++S +YD+VI H TL L +G+ L + EL ++ R Sbjct: 35 FVEIIVAGIVVNVLGLLMPLYSRLIYDKVIGNHIPETLWALTLGMLLFVALELVLRIIRV 94 Query: 204 HIMDNVVSGLDAKLSQALFERLLSVRVDQLPGSVGSLAGQLRGYEQIRSFYTSQTLFTLV 263 + + + LD++ + R+L+ RV Q P VG + + R R +S + LV Sbjct: 95 YYTEQLAGRLDSEFDEVSARRMLTARV-QAP--VGVVLARYRDLSAARDLMSSNYMLLLV 151 Query: 264 DLPLGLLFVLVIAFIASP--WMAMVPTLFGLAAIAIGYLSNRKVVRLADKSAAASNLKTG 321 DLP LL+++V+ I W+ +V + + + A+ + A K Sbjct: 152 DLPFLLLYLVVLGLIGGHMVWVLLVGGGLLVGLQLLLKVPGND---YANSAMKAGTGKVD 208 Query: 322 LLVETVEGVETIKSGSGGWKFLSRWI-DVSAESIRSDMAMRAIGDHAGYIAAMLQQLSYS 380 L V G+ET+K+ + L ++ D SA ++ + R + + I+++ L Sbjct: 209 KLASIVYGMETLKTSPLQHRLLRAFLADASANAV-AQAKSRFWMNTSYAISSVGYTLISV 267 Query: 381 TTVIVGSFLVINGQITMGALIACSILGGRILAPVAMIPGLMVQRAHTKATLAGLEKIYAL 440 T++VG +LV + +T+GALIACS+L R ++ + + + + A ++++ Sbjct: 268 ATLVVGVYLVEDNLLTVGALIACSLLISRAATVLSSLAAFLGRIEMFRRARAEFDQLFE- 326 Query: 441 QTDQGSDRQLTPDSLRGEFRVEEAKFTYAGSLLNAMTIDQLTIKAGERVAILGPIGAGKS 500 + +QG + +RG +V + LTI+ GE+V I+G G+GKS Sbjct: 327 EPEQGPTADVLRQDMRGLIQVGNLLLHLDKKETPTLRNISLTIQPGEKVGIVGRSGSGKS 386 Query: 501 TILRLLSGLYRPQQGRILLDGLDLSNINRLTLNQHIGYLQQDHRLFVGTLRENLLIGLPD 560 T+LR L+GL++ ++G +L+DG+ ++ + IG+ Q+ LF GT+ N+ +G Sbjct: 387 TLLRTLAGLHQAEEGHVLIDGVAVTAYAEEVRMRCIGFKPQEPFLFDGTVAANIFVGDRV 446 Query: 561 PGDEVLRQVMERTGLLRLVSAHPKGLDLPIQEGGRGLSGGQRQLVAFTRLLLCRPDIFLL 620 PG +V + + L L++ LD I+ G LSGGQRQ+VA R++ C P I LL Sbjct: 447 PG-QVYEAALAVSSLDDLIARGELRLDQLIKAPG-NLSGGQRQMVALARVIACTPRILLL 504 Query: 621 DEPTASMDEDLERHCLNVLNEEINGGRTLVVVTHKPAFLPMVERVIVVVGNRIVLDGPRD 680 DEPT +D+ E + L GGRTLVV TH PA L ++R++V+ G RIV DGPR Sbjct: 505 DEPTTGIDQQTEARIIERL-VGYAGGRTLVVATHSPALLRHMDRIVVIDGGRIVADGPRA 563 Query: 681 AVL 683 +L Sbjct: 564 QIL 566 >gi|300312861|ref|YP_003776953.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 578 Score = 132 bits (331), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 111/390 (28%), Positives = 189/390 (48%), Gaps = 16/390 (4%) Query: 301 SNRKVVRLADKSAAASNLKTGLLVETVEGVETIKSGSGGWKFLSRWIDVSAESIRS-DMA 359 + +++ +L S A + T ++ ET + IK GG + + AE++RS M Sbjct: 178 TGKRLKKLNRDSLAVNAEMTQVIEETTRAQQVIKI-FGGQDYEKERFNRRAENLRSYTMR 236 Query: 360 MRAIGDHAGYIAAMLQQLSYSTTVIVGSFLVINGQITMGALIACSILGGRILAPVAMIPG 419 M A I ++ + + +++ NGQIT+G ++ +L P+ + Sbjct: 237 MTAAFSSTVPITQLMTATAVAVVIVMALIQSGNGQITVGGFVSFITAMLMLLTPLKQLAE 296 Query: 420 LM--VQRAHTKATLAGLEKIYALQTDQGSDRQLTPDSL----RGEFRVEEAKFTYAGSLL 473 + +QR +A E++Y L D+ ++R +T ++L G+ E F Y G Sbjct: 297 INGPLQRG-----MAAAEEVYKL-IDKTTER-ITGEALAGRATGQLDFVEVGFAYPGHEQ 349 Query: 474 NAMTIDQLTIKAGERVAILGPIGAGKSTILRLLSGLYRPQQGRILLDGLDLSNINRLTLN 533 A+ L ++AGE +A +G G GKST++ L+ G Y G I LDG D+ I+ +L Sbjct: 350 LALKNINLHVEAGETIAFVGMSGGGKSTLVSLIPGFYSCSSGEIRLDGRDIETISLPSLR 409 Query: 534 QHIGYLQQDHRLFVGTLRENLLIGLPDPGDEVLRQVMERTGLLRLVSAHPKGLDLPIQEG 593 Q I + Q+ LF TL N+ G +P + +E L +V+ P+GL + + Sbjct: 410 QQIAMVNQNTVLFDDTLAANIAYGDANPDPARVEAAVEAAHLTDVVAGLPEGLQTRLGDN 469 Query: 594 GRGLSGGQRQLVAFTRLLLCRPDIFLLDEPTASMDEDLERHCLNVLNEEINGGRTLVVVT 653 G LSGGQRQ VA R + I +LDE T+++D + ER L+ + GRT V+ Sbjct: 470 GSRLSGGQRQRVAIARAIYKDAPILILDEATSALDTESERAVQAALDRLMQ-GRTTFVIA 528 Query: 654 HKPAFLPMVERVIVVVGNRIVLDGPRDAVL 683 H+ + + +R++V+ +I G A+L Sbjct: 529 HRLSTIERADRIVVLAHGQIAEIGTHQALL 558 >gi|300314059|ref|YP_003778151.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 618 Score = 129 bits (325), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 120/425 (28%), Positives = 201/425 (47%), Gaps = 38/425 (8%) Query: 282 WMAMVPTLFGLAAIAIG--YLSNRKVVRLADKSAAASNLKTGLLVETVEGVETIKSGSGG 339 WM + P LAA A+ Y R + +A A A +L TG + + + T+K S Sbjct: 182 WM-LAPFFIWLAAFAVALRYFVPR-LSAVARNQADARSLMTGRITDAYTNIATVKLFSHA 239 Query: 340 WKFLSRWIDVSAESIRS-----DMAMRAIGDHAGY--IAAMLQQLSYSTTVIVGSFLVIN 392 R D + ++R + MR + +G+ + +L + V +L Sbjct: 240 ----GREADYARSAMREFLVTVNQQMRLV---SGFEVVNHLLNMVLIIGATGVSLYLWTQ 292 Query: 393 GQITMGALIACSILGGRILAPVAMIPGLMVQ-RAHTKATLAGLEKIYALQTDQGSDRQLT 451 G++ +GA+ A + + R+ + M H G+ + + D + Sbjct: 293 GKVGVGAVAASTAMALRLNGIAHWVMWEMSSLFEHVGTVQDGINTL-----ARAHDVKDA 347 Query: 452 PDSL-----RGEFRVEEAKFTYAGSLLNAMTIDQL--TIKAGERVAILGPIGAGKSTILR 504 PD+ +GE R E F+Y G+ + +D+L I+ GE++ ++G GAGKSTI+ Sbjct: 348 PDAQPLKVSQGELRFEGVSFSYGGAAPRPV-VDKLDLVIRPGEKIGLVGRSGAGKSTIVN 406 Query: 505 LLSGLYRPQQGRILLDGLDLSNINRLTLNQHIGYLQQDHRLFVGTLRENLLIGLPDPGDE 564 LL Y + GRI +DG D++++ + +L IG + QD L ++REN+ G PD D Sbjct: 407 LLLRFYDIEGGRITIDGQDIAHVTQDSLRAQIGMVTQDTSLLHRSVRENITYGRPDASDA 466 Query: 565 VLRQVMERTGLLRLVS--AHPK---GLDLPIQEGGRGLSGGQRQLVAFTRLLLCRPDIFL 619 + ER + A K G D + E G LSGGQRQ +A R++L I L Sbjct: 467 EMTHAAERAEAHDFIGTLADAKGRTGYDAHVGERGVKLSGGQRQRIAIARVMLKDAPILL 526 Query: 620 LDEPTASMDEDLERHCLNVLNEEINGGRTLVVVTHKPAFLPMVERVIVVVGNRIVLDGPR 679 LDE T+++D ++E L + + G+T+V + H+ + + ++R+IV+ RIV G Sbjct: 527 LDEATSALDSEVEAAIQTSLYKLME-GKTVVAIAHRLSTIAAMDRLIVLDQGRIVEQGSH 585 Query: 680 DAVLA 684 +LA Sbjct: 586 AELLA 590 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.139 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,073,348 Number of extensions: 87091 Number of successful extensions: 676 Number of sequences better than 1.0e-08: 113 Number of HSP's gapped: 575 Number of HSP's successfully gapped: 117 Length of query: 702 Length of database: 1,619,870 Length adjustment: 92 Effective length of query: 610 Effective length of database: 1,184,250 Effective search space: 722392500 Effective search space used: 722392500 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 134 (56.2 bits)