BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3011.p
         (541 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312348|ref|YP_003776440.1| centriolin protein [Herbaspiril...   536   e-153
gi|300311131|ref|YP_003775223.1| hypothetical protein Hsero_1805...    72   2e-13

>gi|300312348|ref|YP_003776440.1| centriolin protein [Herbaspirillum
           seropedicae SmR1]
          Length = 517

 Score =  536 bits (1382), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 288/503 (57%), Positives = 365/503 (72%), Gaps = 7/503 (1%)

Query: 1   MKPISLPKQSAPDPAYLLPWTGTLAVFVMYVMINVWLYESVMKLIKQAANPFFVVLLVIV 60
           MK +S+ K SA DP YL PW GTLAVF  YV++N+WLY+ VM+LI  AANPFFV++LV++
Sbjct: 1   MKSVSMNKPSAGDPVYLAPWLGTLAVFAAYVLVNLWLYQRVMELIAHAANPFFVIVLVVI 60

Query: 61  TVCGQLLTIWQTRHLLTEGKYLEWLIRRFKSAEGQDQSTKLANLNDSLHTGSAALEVREL 120
           TV GQ+LTIWQ + +L EG+ ++ L  R K+   +D  T+ A L   L       ++  L
Sbjct: 61  TVLGQVLTIWQAKRILAEGRQVDLLSGRVKTF-ARDGRTEGAALEQELVKEDRNFDIDRL 119

Query: 121 FQQLLRKDGQPLTHDPVRLQHQADSFVLNIQRRTTLPQYIANTLIGLGLFGTFLGLIVTL 180
            +QL   DG+ +  D  +LQHQ D F  ++QRRT LPQYIANTLIGLGLFGTFLGLIVTL
Sbjct: 120 LRQLKNADGRTIRFDRTQLQHQFDGFAGDLQRRTLLPQYIANTLIGLGLFGTFLGLIVTL 179

Query: 181 KEVAALIGLFGVAGTEG-SDMMAQFFQKMSGPLAGMGDAFVASLLGLGGSIVNNVQLLAT 239
           KEVA LIG+F   GTEG SDMM +FF++MSGPLAGMGDAFVASLLGLGGSIVNNVQLLA 
Sbjct: 180 KEVALLIGMFSSIGTEGGSDMMGKFFERMSGPLAGMGDAFVASLLGLGGSIVNNVQLLAC 239

Query: 240 KKLQRVLCVRAELAYMSTADAVCAPAQAQDGERQALQLAGDPAAGLAQLQEMRAIRSEMH 299
           KKLQR++  RAE  YM  A+ +C    ++D  R A     D A   +QLQE+R IR EM 
Sbjct: 240 KKLQRLVSARAEGFYMHAAEFICT--NSEDVIRAA---KSDTALAESQLQEIRTIRGEMC 294

Query: 300 QQTDAILLASSRMRQVSEPLTKWLESLEKRTAAQAMDRPQLEHIAATMEQRLGSLVHKFE 359
           +QTDAILLA+SRMRQ SEPL K LE+L+K+ +AQA DRPQLE IAA MEQRLGSLV+KFE
Sbjct: 295 RQTDAILLATSRMRQASEPLAKGLETLQKQLSAQAQDRPQLEQIAAAMEQRLGSLVNKFE 354

Query: 360 ETQQAHHGLLTSVRAMEVHLAGIAVGQTELSEDQKNASRKLGELLAATAQDAELSRQAMR 419
           ET+QAH GL+ +V  ME HL  +A      +E Q++ SRKL EL + T Q +EL R A+R
Sbjct: 355 ETRQAHQGLMGAVSNMETHLGELAKASGAQTEQQQDVSRKLSELSSITVQQSELCRNALR 414

Query: 420 EHADSIRNGLGQDMRQVAELIDASLREQREHGLALSNIQGAASGTQVAVETVGAQLLQQG 479
           E++D +R  L +D+ Q+   +D SLR+QRE G  +++IQG+A    VAVET G QLLQQG
Sbjct: 415 ENSDQLRTTLHEDLHQIGMRLDESLRDQREQGQMIASIQGSARSVVVAVETAGVQLLQQG 474

Query: 480 QQLQPQLIEIIARIDKLDISIVA 502
           +QL  Q+ ++IARI+K+D+S+ A
Sbjct: 475 EQLPKQITDLIARIEKIDLSLEA 497


>gi|300311131|ref|YP_003775223.1| hypothetical protein Hsero_1805
           [Herbaspirillum seropedicae SmR1]
          Length = 553

 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 89/205 (43%), Gaps = 13/205 (6%)

Query: 50  NPFFVVLLVIVTVCGQLLTIWQTRHLLTEGKYLEWLIRRFKSAEGQDQSTKLANLNDSLH 109
           NPF  + ++ V V G  L  +    +  E   L     R K+ E  +   K     +   
Sbjct: 36  NPFLNLFIIAVAVFGIALIGYNLWRVNWEHAKLMQFYERTKAGESMESLVKAPEF-EGTE 94

Query: 110 TGSAALEVRELFQQLLRKDGQPLTHDPVR-LQHQADSFVLNIQRRTTLPQYIANTLIGLG 168
            G   + V     +L  +  Q      +  L+   D+       +T  PQ++   +I LG
Sbjct: 95  IGQVLVSVASTKGRLTSRIEQETIEGSLHDLRAHLDA-------KTEFPQFLTGFMIALG 147

Query: 169 LFGTFLGLIVTLKEVAALIGLFGVAGTEGSDMMAQFFQ---KMSGPLAGMGDAFVASLLG 225
           L GTF+GL+ TL   AALI  FG A + G DM A F      +  PLA MG AF AS+ G
Sbjct: 148 LLGTFIGLLETLVSTAALIDGFGKA-SSGGDMDASFMHLVADLQKPLASMGTAFSASMFG 206

Query: 226 LGGSIVNNVQLLATKKLQRVLCVRA 250
           L GS+   + L   +   + L  RA
Sbjct: 207 LIGSLALGLTLTPLRAASKKLVSRA 231


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.131    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,516,386
Number of extensions: 57276
Number of successful extensions: 270
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 266
Number of HSP's successfully gapped: 2
Length of query: 541
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 451
Effective length of database: 1,193,720
Effective search space: 538367720
Effective search space used: 538367720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)