BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3007.p
         (283 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312344|ref|YP_003776436.1| hypothetical protein Hsero_3040...   442   e-125

>gi|300312344|ref|YP_003776436.1| hypothetical protein Hsero_3040
           [Herbaspirillum seropedicae SmR1]
          Length = 281

 Score =  442 bits (1137), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 219/279 (78%), Positives = 251/279 (89%)

Query: 5   SADTDDQNFWPGYVDSMVNMVMYLLLLIAILAMAVMYFSMRARDEAKDSKATEIEVPGKP 64
           + D+D+QNFWPGYVDSMVNMVMYLLLLIAILAMAVMYFSMRARDEA D+KATE    GKP
Sbjct: 3   AVDSDEQNFWPGYVDSMVNMVMYLLLLIAILAMAVMYFSMRARDEAVDAKATEKLALGKP 62

Query: 65  FPKALPGPNALTPVTPSAEELHAQIEQMRQTLNNNEVRYKADVAELKEKLRESDQRFKAS 124
            PKA PGPN   P   + +ELHAQ+E++RQ+++ +E+RYKADVAELKEKLRES+ RFKAS
Sbjct: 63  HPKAYPGPNEAKPEIAAEDELHAQLERLRQSMHESEIRYKADVAELKEKLRESELRFKAS 122

Query: 125 GLAKVEKPNQKERGNNMKSTPEADLAQDGASDRVVDASGTAGALPKGVEQFALRPSVLIV 184
           GL+K EKPNQKERGNN+KSTP+ADLA++GA++RVVDASGTAG+LP+G+E  ALRPSVLIV
Sbjct: 123 GLSKTEKPNQKERGNNLKSTPDADLAKEGAAERVVDASGTAGSLPQGLEALALRPSVLIV 182

Query: 185 RFRPGTVDLNTGEAKRMNDTFISHFDWNGNREQTFTISAAAVEGLSESNRMAFYRVVAVR 244
           RFRPGTVDL+  EAKRM +TF+SHF+WN NREQTFTIS+ AVEGLSESNRMAFYRVVAVR
Sbjct: 183 RFRPGTVDLSGIEAKRMTETFVSHFNWNANREQTFTISSTAVEGLSESNRMAFYRVVAVR 242

Query: 245 NHLLSIGVPAARIRQRIEPVPAARQSGTEGLEIRIQKSE 283
           NHLLS+GVPA+RIRQRIEPV AA QSG EGLEIRIQKSE
Sbjct: 243 NHLLSLGVPASRIRQRIEPVQAASQSGVEGLEIRIQKSE 281


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.130    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 834,467
Number of extensions: 32556
Number of successful extensions: 110
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 2
Length of query: 283
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 199
Effective length of database: 1,222,130
Effective search space: 243203870
Effective search space used: 243203870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)