BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3006.p
         (130 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312343|ref|YP_003776435.1| hypothetical protein Hsero_3039...   163   5e-42
gi|300310421|ref|YP_003774513.1| hypothetical protein Hsero_1088...    55   2e-09

>gi|300312343|ref|YP_003776435.1| hypothetical protein Hsero_3039
           [Herbaspirillum seropedicae SmR1]
          Length = 132

 Score =  163 bits (412), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 87/131 (66%), Positives = 98/131 (74%), Gaps = 2/131 (1%)

Query: 1   MSEAASSIEEALVGKTTYTLDVTQAGTALRKIPIETIKDVRSLGIDLLLVLRSGGQILLR 60
           MS+ A + EEAL GKTTYTLD+ QAGTALRKIPIE+IKDVRSLGIDLLLV  SGGQILLR
Sbjct: 1   MSQEAQTAEEALAGKTTYTLDIAQAGTALRKIPIESIKDVRSLGIDLLLVFSSGGQILLR 60

Query: 61  EGALDALVNPNRRLEFSDGVLTLQQIFMQSEQFDFLNQSGSSVE--YEVHVADAYGRPLP 118
           EGAL+ALV+P RRL+FSDGVLTLQQIF QSE+FDF N   S+ +         A     P
Sbjct: 61  EGALEALVHPQRRLQFSDGVLTLQQIFTQSERFDFFNNDSSAPDGPGAAAQHLAALAASP 120

Query: 119 EWGHAAVFPFG 129
           E    A +PFG
Sbjct: 121 EASVMASYPFG 131


>gi|300310421|ref|YP_003774513.1| hypothetical protein Hsero_1088
          [Herbaspirillum seropedicae SmR1]
          Length = 8016

 Score = 54.7 bits (130), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 56/80 (70%)

Query: 16 TTYTLDVTQAGTALRKIPIETIKDVRSLGIDLLLVLRSGGQILLREGALDALVNPNRRLE 75
          TT  L ++++   L+ I +++IKDVR+L +DLLLVL +G QIL+  GA+ AL +P+  L+
Sbjct: 2  TTTVLKLSESSAFLKTISLKSIKDVRALDVDLLLVLTNGDQILISGGAMHALNSPDMALQ 61

Query: 76 FSDGVLTLQQIFMQSEQFDF 95
          FSDG L L ++F Q E+ + 
Sbjct: 62 FSDGQLPLARVFEQIERINV 81


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.136    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 393,893
Number of extensions: 15014
Number of successful extensions: 51
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 2
Length of query: 130
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 55
Effective length of database: 1,264,745
Effective search space: 69560975
Effective search space used: 69560975
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)