BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2989.p
         (155 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312325|ref|YP_003776417.1| chemotaxis signal transduction ...   199   1e-52

>gi|300312325|ref|YP_003776417.1| chemotaxis signal transduction
           protein [Herbaspirillum seropedicae SmR1]
          Length = 158

 Score =  199 bits (505), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 103/150 (68%), Positives = 116/150 (77%)

Query: 1   MNQPLFLLFSLGDERYALPTAEVAMVLPLSPCKALPGTPAWVAGLLPHGERHVPVIDLSM 60
           +  PLFLLFSLG +RYALP AEVA+VLPL+PCK LPG PAWVAGLLP+  RHVPVIDLS 
Sbjct: 4   VTDPLFLLFSLGADRYALPVAEVAVVLPLTPCKQLPGAPAWVAGLLPYEGRHVPVIDLSQ 63

Query: 61  LALGRAAPARVSTRLVLVHYRAGLSTPVLLGLLLERATETLRADPAHFTSAAIRNEGAPY 120
             LGR A  RVSTRLVLVH R+    P LLGL+LE+AT+TLR     F  A + ++  PY
Sbjct: 64  RTLGRPAAQRVSTRLVLVHDRSPAGEPALLGLILEQATDTLRCAEQQFVRATVAHDETPY 123

Query: 121 LGPVMPYQGGLLQRVQVDDLLDPATRALLY 150
           LGPVMPYQGGLLQRVQV  LLD ATRA+LY
Sbjct: 124 LGPVMPYQGGLLQRVQVSALLDAATRAVLY 153


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.139    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 485,353
Number of extensions: 19109
Number of successful extensions: 71
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 1
Length of query: 155
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 77
Effective length of database: 1,250,540
Effective search space: 96291580
Effective search space used: 96291580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)