BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2987.p
         (223 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312323|ref|YP_003776415.1| chemotaxis signal transduction ...   208   3e-55

>gi|300312323|ref|YP_003776415.1| chemotaxis signal transduction
           protein [Herbaspirillum seropedicae SmR1]
          Length = 211

 Score =  208 bits (530), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 111/145 (76%), Positives = 119/145 (82%), Gaps = 4/145 (2%)

Query: 82  DSALVVRIAGEWLAIATAVVQEVAEARPVHSLPHQRNTAITGVLNIRGVLRICVSLAQLF 141
            S LVVRI  EW AIAT VVQEVAEAR VHSLPHQRN AI GVLNIRG LRICVSLAQLF
Sbjct: 68  SSVLVVRIGVEWWAIATTVVQEVAEARVVHSLPHQRNPAILGVLNIRGALRICVSLAQLF 127

Query: 142 QL---PTQSRAPYLLVALHEGQTLVFPVEEVAGVHRYAPDTLAAVPTTLAQASIQYTRGM 198
           Q      ++  P LLVA H+GQTLVFPV+EVAGVHR+   +L  VPTTLAQA+IQYTRGM
Sbjct: 128 QFGAAAPKALPPKLLVASHDGQTLVFPVDEVAGVHRHD-GSLGPVPTTLAQAAIQYTRGM 186

Query: 199 VEWRGHPIGLLDHELLFYVLNRSMT 223
           +EWRGH IGLLDHELLFYVLNRSMT
Sbjct: 187 LEWRGHAIGLLDHELLFYVLNRSMT 211


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.134    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 722,305
Number of extensions: 29243
Number of successful extensions: 95
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 1
Length of query: 223
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 141
Effective length of database: 1,231,600
Effective search space: 173655600
Effective search space used: 173655600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)