BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2976.p
         (266 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312308|ref|YP_003776400.1| transmembrane protein [Herbaspi...   535   e-153

>gi|300312308|ref|YP_003776400.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 266

 Score =  535 bits (1377), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 255/266 (95%), Positives = 261/266 (98%)

Query: 1   MHKILLKFFIIGFALSLTACGLLPEQKDETVGWSAAKLYSEAKDELNAGGYDKAIKYFEK 60
           MHKILLKFFIIGFALSLTACGLLPEQKDET GWSAAKLYSEAKDELNAGGYDKAIKYFEK
Sbjct: 1   MHKILLKFFIIGFALSLTACGLLPEQKDETTGWSAAKLYSEAKDELNAGGYDKAIKYFEK 60

Query: 61  LESRYPFGTYAQQAQMDIAYAYYRQNEQAQGLAAVDRFIKLHPNHPNVDYMYYLRGLINF 120
           LESRYPFGTYAQQAQMDIAYAYYRQNEQAQGLAAVDRFIKLHPNHPNVDYMYYLRGLINF
Sbjct: 61  LESRYPFGTYAQQAQMDIAYAYYRQNEQAQGLAAVDRFIKLHPNHPNVDYMYYLRGLINF 120

Query: 121 NDRTSIFDTFTDQDNTERDPKAMRDAFDSFKLLAERFPESKYTPDAIARMKYLVNAMAQY 180
           NDRTSIFDTFTDQDNTERDPKAMRDAFDSFKLLAERFP+SKYTPDAIARMKYLVNAM+QY
Sbjct: 121 NDRTSIFDTFTDQDNTERDPKAMRDAFDSFKLLAERFPDSKYTPDAIARMKYLVNAMSQY 180

Query: 181 DVHVASYYYRRGAYVSAANRAQAAIKQYPDSPANEEALFILMHSYEALGQTKLKEDTERI 240
           DVHVASYY+RRGAYVSAANRAQ+AIKQYPDSPANEEALFILM SYEALGQTKLKEDTERI
Sbjct: 181 DVHVASYYFRRGAYVSAANRAQSAIKQYPDSPANEEALFILMRSYEALGQTKLKEDTERI 240

Query: 241 IQATYPNSPWYHGGPKKKDNPWWKIW 266
           IQATYPNSPWY+GGPK K  PWWK+W
Sbjct: 241 IQATYPNSPWYNGGPKPKSKPWWKLW 266


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 824,667
Number of extensions: 32068
Number of successful extensions: 99
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 182
Effective length of database: 1,222,130
Effective search space: 222427660
Effective search space used: 222427660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)